Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g01051 ATGGATCATTATACTGGTAAAAGAGCTATCGATGGAGTGATACTCTCCAGAAAGGGCTCAGGGCATATGTATAGTGATGCTGCTAACAATAGGGATCGAAATCCTCAACTTTGCAACCAACTTGGTTGCAATGGAAAAGTCAACTCCCCGAAAGGTGCCCAACCTGGTTGTTCTGGAAAAGGTAAATCCCCAAGGCCATCCTTCCGCTTCTCTTCAAGTGGTAAAGAAGTAATTGGGACTCCTTCTAAAGCTTGCAGCAGTTCAAGTAATGCAAGAAAATCCTTGACAGTGGAGCGGAAGACACTGTACTCACATTTAGAAACAGATTCATTTGAAACTAGTAGTGTGCAAAATGGACCAGAAGTTTTAGAGCTCATACCTCCACCTGAGAAATTTAAGAGACGCCTTCCAGCTGAATCCAAAAAAGTGGAGTCTAGTAATGCTATGGTAATGGGTTCTAGTGTTGCATCAAAGGCGAGATCACGTAGGAACTTCAATGACAGAACTGGATTGCAAAGTCAGGATGTAGTTGCAGGTAGTTCTATTTCTTTGTGCTCTAGAAGCACTGGCCATTTTACAATTGCTGGTAGCAATAAATTTGGTTTGAAGAACTGCAGATGCAATTCTATATCATATGCTATCTCCCCAGGTTGTTTGTCGTCAGAGTCAAACCACAGTAGAAGGAAAGATACGATAAAGAAAAGGAACTCTGAGGGAGAAAGTAGCTTTACTTCTCAAGGGAAGAAGATTTTTGGTTCGGCATCAGAAGTGCGGAATTCTAGTTCCCAAAATGGAAGTTCTATGGCTGAGTCAAGACGATCTAGAAATACTCATCAAAACAGGGGTAATGCGGCGACCTCAGCTAGGACTAGGCGAACAAATAATAGTCATACTAGAGCTAGGATCTCAAGTCAAGGAAATGATAGCGCCGTCTCTTGTAATGACACCTCTCTCCTGATATCATCCATGTCTGATTCTGATGACCTTAATTCGTCTGCTCTATCACTTCACGTTTCCTCAGAGGCTTCCACAAGTCATCCAATTTCTTTCAGTAGACCTGGGAGTAGCAGCGAGCGCATATGTACTATTATGCCTACCAGTTCTAGTGAAGTTTCCATCAGTCACTCTTTGGTGAATCGAGATAACATTAGAAGATTTAATATGGACGGAATTGCTGAGGTGTTGCTGGCTCTTGAGAGAATTGAACAAGATGAAGAACTGACACATGAGCAAATGCTTGTTCTGGAGACCAACTTGTTCCTTAACAGTCTTACATTCTATGATCAGCATAGGGACTTGAGGCTGGACATCGATAATATGTCATACGAGGAACTGTTAGCTCTAGAAGAGAGGATGGGCACTGTGAGCACAGCACTTACAGAGGAAGCATTGGCAGAATCACTGAAAAAAAGCATATATCAAGCTTCACCATCATATGATGTAACTGAGGGCTGTGATGGGAATGATGATGAGATTAAATGCAGCATCTGCCAGGAAGAATACATGGTGGGCGATGAAGTTGGCAATTTACTATGTGAGCATAGGTATCACACAGTCTGCATAAAACAATGGCTGCAATTCAAAAATTGGTGTCCAATATGTAGATCATCAGCTGCACCCTCAAAATCTGTTCCACCGTCATGA 1644 0.4227 MDHYTGKRAIDGVILSRKGSGHMYSDAANNRDRNPQLCNQLGCNGKVNSPKGAQPGCSGKGKSPRPSFRFSSSGKEVIGTPSKACSSSSNARKSLTVERKTLYSHLETDSFETSSVQNGPEVLELIPPPEKFKRRLPAESKKVESSNAMVMGSSVASKARSRRNFNDRTGLQSQDVVAGSSISLCSRSTGHFTIAGSNKFGLKNCRCNSISYAISPGCLSSESNHSRRKDTIKKRNSEGESSFTSQGKKIFGSASEVRNSSSQNGSSMAESRRSRNTHQNRGNAATSARTRRTNNSHTRARISSQGNDSAVSCNDTSLLISSMSDSDDLNSSALSLHVSSEASTSHPISFSRPGSSSERICTIMPTSSSEVSISHSLVNRDNIRRFNMDGIAEVLLALERIEQDEELTHEQMLVLETNLFLNSLTFYDQHRDLRLDIDNMSYEELLALEERMGTVSTALTEEALAESLKKSIYQASPSYDVTEGCDGNDDEIKCSICQEEYMVGDEVGNLLCEHRYHTVCIKQWLQFKNWCPICRSSAAPSKSVPPS* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g01051 547 MobiDBLite consensus disorder prediction 139 161 - -
Pte8g01051 547 MobiDBLite consensus disorder prediction 65 91 - -
Pte8g01051 547 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 79 539 IPR045191 GO:0061630
Pte8g01051 547 SUPERFAMILY RING/U-box 489 541 - -
Pte8g01051 547 Pfam Ring finger domain 493 535 IPR001841 -
Pte8g01051 547 MobiDBLite consensus disorder prediction 238 312 - -
Pte8g01051 547 MobiDBLite consensus disorder prediction 49 91 - -
Pte8g01051 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 456 540 IPR013083 -
Pte8g01051 547 ProSiteProfiles Zinc finger RING-type profile. 494 535 IPR001841 -
Pte8g01051 547 MobiDBLite consensus disorder prediction 218 312 - -
Pte8g01051 547 MobiDBLite consensus disorder prediction 146 161 - -
Pte8g01051 547 SMART ring_2 494 534 IPR001841 -
Pte8g01051 547 MobiDBLite consensus disorder prediction 223 237 - -
Pte8g01051 547 FunFam E3 ubiquitin-protein ligase arkadia 456 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g01051 Pte-Chr8 34730426 34733953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g01051 373 538 C3H Transcription Factor Family AT2G15530 41.566 1.81e-34 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g01051 - - qsa:O6P43_019348 603.208