Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g01022 ATGGCTAACATCACCACCGATTCACGTATATCTCGTCGCATCGTTCGCGCTTTCTTGGAATTTCTGAACTCAGTGGAACCTGCTGCTGGCGTTGATGTTGAAGGGATTGAGGTTGTTAGGGAGTGTTTGACTGAGGTGTTTAAACTTAACTCATCTTCTGTTGATGATCGTGTGAAGCCAGATTCATTGGTTGACATCTTCAGTTCTCTTGAAGAAAATAAGCATCAGGAAACTAGTAGGTCTGATCTTGGTTCTGGTTGTCAACAAAATTCAGTTGATACTCCCACGACATCTTCTGCTCAAGAAACTTCTGATGCTAAGGATGAAGACTCAATGAGGGACTTTCAAGAATCTGGTGTTTCTAAAGATGAACTTTGTGGGAGATTCTTTTCTGCTCTGGAAAAAAGTAACTTTTTCGGGAGTACACCTGATGGAAGGGATGACCCAGCCCAGTTGGAGAAAGCATCTCAAATGTTTGATGATGCTTTGACAGAGATGGAAAGATCTGGACATCAGGAATTTAGTTTAAGAAACTTGGGTGATATGTTGAAGGCTCAGGGTAACAAAGCTATGCAATCGAAGCTTTATTCTGATGCTGTTGAGTTATACAGTTGTGCGATTGCTCTTTCTGGAAATAACGCTGTTTACTACTGTAACAGGGCAGCTGCTTACACTCAGATTCACAAATATACTGAAGCAATCAGAGATTGTCTTAAATCTATTGAGATTGACCCAAACTACAGCAAGGGATACAGTCGTTTGGGATTAGCCTATTATGCACAAGGAAATTACCGTGATTCTATTGAAATGGGATTTAAAAGAGCCCTACAGTTGGACCCAAATAATGAGTCTGTCAAAGAAAACATTCGGGTGGCTGAGATAAAATTGATAGAGCAACAGCAACAAGCGAATCATAGTTGGGATTCAGCTTCGTCTAGTCATAGCAGTGCAGAGTCACGAGGCCAGTCTGGAAGATCAGGAAGTCACTTTGCACCGCCTCCATTTACATCTATGCCTTTCAATGTCAATGCCCTTCCTGCAGATATAGCTAGCATGTTCATGAATGCATACCAAGGACCAAATCCTGAGAATGTTCAGGGGCCTCATGCTCATGGGGATGGGACTCATGAGCCTGAGATTAGGATTGGGGGAAACATTAATTTAAATTTTGGAGATCAGATGCCTCAGGATATATCGGGGGCCTTGAGATCTGTTATGGAAATGTTTTCTGCTTCATCTGGTGGGCAATCACAAGAGCATATGAATGGAAGAACTGCTCCAAATTAA 1287 0.4204 MANITTDSRISRRIVRAFLEFLNSVEPAAGVDVEGIEVVRECLTEVFKLNSSSVDDRVKPDSLVDIFSSLEENKHQETSRSDLGSGCQQNSVDTPTTSSAQETSDAKDEDSMRDFQESGVSKDELCGRFFSALEKSNFFGSTPDGRDDPAQLEKASQMFDDALTEMERSGHQEFSLRNLGDMLKAQGNKAMQSKLYSDAVELYSCAIALSGNNAVYYCNRAAAYTQIHKYTEAIRDCLKSIEIDPNYSKGYSRLGLAYYAQGNYRDSIEMGFKRALQLDPNNESVKENIRVAEIKLIEQQQQANHSWDSASSSHSSAESRGQSGRSGSHFAPPPFTSMPFNVNALPADIASMFMNAYQGPNPENVQGPHAHGDGTHEPEIRIGGNINLNFGDQMPQDISGALRSVMEMFSASSGGQSQEHMNGRTAPN* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g01022 428 Coils Coil 282 302 - -
Pte8g01022 428 MobiDBLite consensus disorder prediction 302 330 - -
Pte8g01022 428 Pfam Tetratricopeptide repeat 214 247 IPR001440 GO:0005515
Pte8g01022 428 Gene3D Tetratricopeptide repeat domain 180 329 IPR011990 GO:0005515
Pte8g01022 428 SMART tpr_5 180 213 IPR019734 GO:0005515
Pte8g01022 428 SMART tpr_5 248 282 IPR019734 GO:0005515
Pte8g01022 428 SMART tpr_5 214 247 IPR019734 GO:0005515
Pte8g01022 428 MobiDBLite consensus disorder prediction 302 332 - -
Pte8g01022 428 Gene3D Immunoglobulin FC, subunit C 2 74 - -
Pte8g01022 428 SUPERFAMILY TPR-like 182 293 IPR011990 GO:0005515
Pte8g01022 428 ProSiteProfiles TPR repeat profile. 248 282 IPR019734 GO:0005515
Pte8g01022 428 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 175 326 - -
Pte8g01022 428 PANTHER LD24721P 1 422 IPR047150 -
Pte8g01022 428 MobiDBLite consensus disorder prediction 74 117 - -
Pte8g01022 428 MobiDBLite consensus disorder prediction 103 117 - -
Pte8g01022 428 MobiDBLite consensus disorder prediction 80 102 - -
Pte8g01022 428 ProSiteProfiles TPR repeat profile. 214 247 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g01022 Pte-Chr8 34380258 34386564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g01022 179 278 U-box Gene Family AT3G07370 31.000 3.34e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g01022 K16365 - qsa:O6P43_019753 544.658