Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g01006 ATGGACCCTGAAGAGAACAAACAGTCTTCACAGAAAAGTCCATTAAGCGAACTTGAGCAAGTCAACTCTGATTTCGTCTTGGCAATAACGTTGCAGGAACAAGAGAGAGCACTCACATTGGTGACAACTACAGAAAGTGATACTGATGAAGATGATGACTGCTCCTCTTTCGACGATGTTTACAGCGATGACGCCGAGTTTTTCGACAGCCAACAAGTCGGGGCAGACCTTGAGTTTCTTGAGAATGAAGAAACCAATATGAACACAGATGAAGAAATGGAAGAAGATGATATAGATCCAGATGAGTTATCCTACGAAGAGTTGATAGCGTTAGGAGAATTCATCGGAGAAGAAAAGAAAGGAATGGCCATGAAAGAAATTCCTTCTTGTTTACGCCCCTATACAAATCATTCTCCAGTGAACAGGAATGATACTGATCGTTGCGTGATTTGCCAGGTTGAATATGAACAAGGTGAAGCTCTAGTTATGCTTCAATGTGAGCATCCTTATCATTCAGACTGTATTAGTAAGTGGCTTCAGATTAAGAAAGTGTGCCCCATTTGTAACATTGAAATTTGTTCACCATAG 588 0.4082 MDPEENKQSSQKSPLSELEQVNSDFVLAITLQEQERALTLVTTTESDTDEDDDCSSFDDVYSDDAEFFDSQQVGADLEFLENEETNMNTDEEMEEDDIDPDELSYEELIALGEFIGEEKKGMAMKEIPSCLRPYTNHSPVNRNDTDRCVICQVEYEQGEALVMLQCEHPYHSDCISKWLQIKKVCPICNIEICSP* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g01006 195 SUPERFAMILY RING/U-box 147 193 - -
Pte8g01006 195 ProSiteProfiles Zinc finger RING-type profile. 148 189 IPR001841 -
Pte8g01006 195 Pfam Ring finger domain 147 189 IPR001841 -
Pte8g01006 195 SMART ring_2 148 188 IPR001841 -
Pte8g01006 195 FunFam E3 ubiquitin ligase BIG BROTHER-related 114 195 - -
Pte8g01006 195 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 4 94 IPR043312 -
Pte8g01006 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 194 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g01006 Pte-Chr8 34064265 34064963 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g01006 95 192 C3H Transcription Factor Family AT3G63530 49.000 4.30e-28 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g01006 K19045 - qsa:O6P43_015155 218.394