Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte8g00998 | ATGCTGAAGACGAAGGCATTCAAAGGAGCCAACGTGTTCATGTCACGTAACCTTGTGCCGCCGGAGATATTCGATACGCTTCACGACGCGCTCAAGCTCAATGGTGCACAGATCTTCCTTTGTTGTGACCCCTCGCGCAATGGTCCCAACGATTACCACGTCATATCTTCTTTCGATCATGAGAAATTTAAAGATCTTAAAGCTAAGGGTTGTAATTTGCTAGGTCCCCAATGTGTGCTTTCCTGTGCAAAAGAAAATAGACCATTACCTAAACAAGGGTATACTTGTTGCCTTGCTATGGATGGTGTCAAAGTACTTGTATCTGGTTTTGAAATGGACGAGAAGGCTAAGATAGGAAATATTGTATCTGCAATGGGCGGAGTGCTGCATACTAAAGCGTCATTTGATGTTAATTTTGTTATTGTAAAGAATGTTTTGGCTGCAAAATACAAGTGGGCTTTAAATATTCTGAAGAAACCTATAATCACTATCAATTGGCTGTATCAGTGCTGGAGTGAGCATCGCATTGTTCCTCAAGAGTCATATAAAGTACTTCCTTTTTCTGGACTAGAAATCTGTGTTACAGGAATTCCAGGAGATGAACGCAAAAGGATTGAGAAGCTTATCTCGGAAAATGGTGGAAAATACTCTGCTGAGTTGACGAAGAAGTGCACACATTTGATTTCTCCAGAAGGTGACAAATATAAGGTTGCCAGAAAGTGGGGCCATATCCATACAGTGACACGGAAATGGTTTGATCAATCTATCGGCAAAAGAGCTTGTCTTAACGAGGAGTCGTATCCTGTTCAGGGTGGGTCTATGCCTTCATGTAGAACAGTTAGCTTCACATCTCATTATAGCCAAGAAAAAGACATTGGGAGGCTGCAGTCAGCGGCATCCTCAGGTGCTGTAGATTGTAGTTTGCCTGCTGGATCATCTGCTAGGATTGGGGTTCCAGAATCAGATGTCTGCATTTCACAAACAACAACTGCCTTTTCAGATGCTCCTGTATCCAGTCAAGAGTTAAATAATGCAGTACCAGCTATTCAGCCTAAAGATAACTCAAATTTGGAGGGTACTGTTGCCAAAGATTCTGAATCTGATAATGACAATGACCTGTACTTATCGGAGTGCAGAATATTACTCATAGGCTTTGAAGCTTCTGAAATGCGTAGACTGGTTAATATGGTCCGCAGGGGTGGAGGCTGCCGTTATATGTATTTAAATGATAGATTGACACACATTGTGATTGGAACCCCTTCTGAGATGGAAAAGAAAGACATAAGGAGTTTAGCGGCTTTAGGTATTATTTCAGTTGTTAGAACCACGTGGCTTGAAGATTGTGACCTTCAAAAGAAAGAAATGCCTGTTCTTAGTAGACATGTTGCCTCTGACCTGCTTCTTCCAAAAGCTGATCGGTTGCTGCAAAATATGAACCAGAAGAATGGAACTTCGTGTTCCTTGGAGAAAAAAACAGAGAGACAAGCAATGGATGAGAATCGACACATCTTTCTTAAAAAAAATGAGAGGATGTCACAGCCAAGTCAAGTTCCTGTAATTGAAAACAAAATCAAGGGGCAAGAAAATATGCAAAACAATTCCATTGTTCAAAATTTGAAGTCATCTACTGTATTCAAAGGACGAATATTTTGCTTTTCTAGTTCCTTCCCTGAAGAGAGGAGAGCTGAAATTGTTCAATGGGTTAAACAAGGGGGAGGTGAGCTGGTGGATGCTACTGGCAGTCAGAATGTCCACTTCATCATTGAGTGTCATAGTGTCAGACAAAGCTCAGCTGATGTAAGTCCAGCTACTTGTGTTTCTAGCCATTGGATACGTTCTTGCTTGGAGGATGGGTCTTTACTGAATGTGGACAGTCACGTTCTTTATTCTCCACTTTCCTGCAATGTTCCCTTACCTGGGTTTGAGAACTTGCGGTTTTGTGTGTCACAATATGAAGAGAAAGAAAGAGTTCTACTGAGAAACTTGTGTTTCGTTCTTGGAGCCAAATTTGTGGAGAAGCTGAACAAGAAGGTGACACATTTACTCTGTAAGTTCACTAATGGCCCAAAGTATGAGTTTGCTTGCAAATGGGGGATACAGTGCGTCACATCAGAGTGGATCCTTGAATGTGTGACACAGAATGGGGTTGTTGCTATTAATCAATTTGGACCAAAAGATGTTACATTGCAAGACCAAGATGCTGGACATTGCATTACCACTCAGTTTCACACACAAGCTGTCAGAATGATATGTGAAGATAGTACATCTCAGATGCCAACTCAGTCCCATTATCGGAGAGATTACCGGGACCAAAGTTCCAGAGGCACAATTGACGACGTTAGGGATGGGGCTAACTTAAGTGGTTTCAGCAAAAAAGCGAGAGTTTCGGAGGATCACTGGGAAAATGTTTTGCAAACTTCTGCAGTCCAAAAGGAATATCCTATTGACAATGGCATAAAAGACATGAGAGATGTTTCCAATGCAGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGGAGACAAGTAAGATTAATGAGCAGATCTCGCCAGGAAGGATCGTTTGTGAGAAAAATCTTTTCTCAGCTGATTGTTCGGATACTCATTCTGTCATTGGGTTACCTGGACATTGGTTAAACAGGTAA | 2649 | 0.4164 | MLKTKAFKGANVFMSRNLVPPEIFDTLHDALKLNGAQIFLCCDPSRNGPNDYHVISSFDHEKFKDLKAKGCNLLGPQCVLSCAKENRPLPKQGYTCCLAMDGVKVLVSGFEMDEKAKIGNIVSAMGGVLHTKASFDVNFVIVKNVLAAKYKWALNILKKPIITINWLYQCWSEHRIVPQESYKVLPFSGLEICVTGIPGDERKRIEKLISENGGKYSAELTKKCTHLISPEGDKYKVARKWGHIHTVTRKWFDQSIGKRACLNEESYPVQGGSMPSCRTVSFTSHYSQEKDIGRLQSAASSGAVDCSLPAGSSARIGVPESDVCISQTTTAFSDAPVSSQELNNAVPAIQPKDNSNLEGTVAKDSESDNDNDLYLSECRILLIGFEASEMRRLVNMVRRGGGCRYMYLNDRLTHIVIGTPSEMEKKDIRSLAALGIISVVRTTWLEDCDLQKKEMPVLSRHVASDLLLPKADRLLQNMNQKNGTSCSLEKKTERQAMDENRHIFLKKNERMSQPSQVPVIENKIKGQENMQNNSIVQNLKSSTVFKGRIFCFSSSFPEERRAEIVQWVKQGGGELVDATGSQNVHFIIECHSVRQSSADVSPATCVSSHWIRSCLEDGSLLNVDSHVLYSPLSCNVPLPGFENLRFCVSQYEEKERVLLRNLCFVLGAKFVEKLNKKVTHLLCKFTNGPKYEFACKWGIQCVTSEWILECVTQNGVVAINQFGPKDVTLQDQDAGHCITTQFHTQAVRMICEDSTSQMPTQSHYRRDYRDQSSRGTIDDVRDGANLSGFSKKARVSEDHWENVLQTSAVQKEYPIDNGIKDMRDVSNAVPDVAAAIEDLLEETSKINEQISPGRIVCEKNLFSADCSDTHSVIGLPGHWLNR* | 883 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte8g00998 | 882 | FunFam | Transcription coactivator | 351 | 462 | - | - | |
| Pte8g00998 | 882 | SUPERFAMILY | BRCT domain | 542 | 630 | IPR036420 | - | |
| Pte8g00998 | 882 | FunFam | DNA topoisomerase II binding protein 1 | 187 | 275 | - | - | |
| Pte8g00998 | 882 | Gene3D | BRCT domain | 537 | 633 | IPR036420 | - | |
| Pte8g00998 | 882 | ProSiteProfiles | BRCT domain profile. | 100 | 184 | IPR001357 | - | |
| Pte8g00998 | 882 | SUPERFAMILY | BRCT domain | 373 | 455 | IPR036420 | - | |
| Pte8g00998 | 882 | Gene3D | BRCT domain | 635 | 725 | IPR036420 | - | |
| Pte8g00998 | 882 | Gene3D | BRCT domain | 97 | 185 | IPR036420 | - | |
| Pte8g00998 | 882 | CDD | BRCT | 103 | 170 | - | - | |
| Pte8g00998 | 882 | ProSiteProfiles | BRCT domain profile. | 370 | 462 | IPR001357 | - | |
| Pte8g00998 | 882 | Gene3D | BRCT domain | 352 | 459 | IPR036420 | - | |
| Pte8g00998 | 882 | Gene3D | BRCT domain | 186 | 270 | IPR036420 | - | |
| Pte8g00998 | 882 | PANTHER | DNA REPLICATION REGULATOR DPB11-RELATED | 1 | 870 | - | - | |
| Pte8g00998 | 882 | SMART | BRCT_7 | 97 | 174 | IPR001357 | - | |
| Pte8g00998 | 882 | SMART | BRCT_7 | 638 | 714 | IPR001357 | - | |
| Pte8g00998 | 882 | SMART | BRCT_7 | 4 | 86 | IPR001357 | - | |
| Pte8g00998 | 882 | SMART | BRCT_7 | 184 | 259 | IPR001357 | - | |
| Pte8g00998 | 882 | SMART | BRCT_7 | 542 | 618 | IPR001357 | - | |
| Pte8g00998 | 882 | SMART | BRCT_7 | 372 | 452 | IPR001357 | - | |
| Pte8g00998 | 882 | SUPERFAMILY | BRCT domain | 186 | 269 | IPR036420 | - | |
| Pte8g00998 | 882 | FunFam | Transcription coactivator | 36 | 94 | - | - | |
| Pte8g00998 | 882 | FunFam | Transcription coactivator | 97 | 185 | - | - | |
| Pte8g00998 | 882 | SUPERFAMILY | BRCT domain | 57 | 183 | IPR036420 | - | |
| Pte8g00998 | 882 | SUPERFAMILY | BRCT domain | 603 | 723 | IPR036420 | - | |
| Pte8g00998 | 882 | ProSiteProfiles | BRCT domain profile. | 182 | 269 | IPR001357 | - | |
| Pte8g00998 | 882 | MobiDBLite | consensus disorder prediction | 348 | 362 | - | - | |
| Pte8g00998 | 882 | Gene3D | BRCT domain | 35 | 94 | IPR036420 | - | |
| Pte8g00998 | 882 | ProSiteProfiles | BRCT domain profile. | 540 | 628 | IPR001357 | - | |
| Pte8g00998 | 882 | ProSiteProfiles | BRCT domain profile. | 641 | 724 | IPR001357 | - | |
| Pte8g00998 | 882 | Pfam | BRCT domain, a BRCA1 C-terminus domain | 542 | 625 | IPR001357 | - | |
| Pte8g00998 | 882 | MobiDBLite | consensus disorder prediction | 763 | 777 | - | - | |
| Pte8g00998 | 882 | CDD | BRCT_TopBP1_rpt2_like | 186 | 259 | - | - | |
| Pte8g00998 | 882 | FunFam | Transcription coactivator | 537 | 634 | - | - | |
| Pte8g00998 | 882 | MobiDBLite | consensus disorder prediction | 757 | 777 | - | - | |
| Pte8g00998 | 882 | CDD | BRCT_TopBP1_rpt2_like | 639 | 714 | - | - | |
| Pte8g00998 | 882 | MobiDBLite | consensus disorder prediction | 348 | 368 | - | - | |
| Pte8g00998 | 882 | Pfam | twin BRCT domain | 644 | 706 | IPR001357 | - | |
| Pte8g00998 | 882 | Pfam | twin BRCT domain | 190 | 251 | IPR001357 | - | |
| Pte8g00998 | 882 | Pfam | twin BRCT domain | 103 | 166 | IPR001357 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte8g00998 | Pte-Chr8 | 33985654 | 33994105 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte8g00998 | 1 | 882 | Core DNA Replication Machinery Family | AT1G77320 | 50.777 | 0.0 | 860 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte8g00998 | K10728 | - | qsa:O6P43_015132 | 1144.41 |