Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00980 ATGGAAGATTTTTCTGGGTCTGCTGGTTCAGGTGATAACACAGAGATTCCCATCTCCCCCCGAGGTCACTGGAGGCCTGCAGAAGATGAGAAACTGAGACAGTTAGTTAAACAACATGGTGCACAAAATTGGAACTCTATTGCTGAGAAACTCCGAGGAAGATCAGGTAAAAGTTGTAGACTTAGATGGTTTAACCAGCTAGACCCTAGAATCAACAGAAGGCCATTTACTGAAGAGGAAGAAGAAAGGCTTCTTGCAGCACATAGTCTCCACGGCAACAAGTGGGCACTTATAGCTAGGCATTTCCCAGGTCGAACTGATAATGCAGTGAAGAACCACTGGCATGTAATAATGGCAAGAAAGCAAAGGGAGCAATCCAAGTCATGTGAGAAAAGGAGCTTCCATGCTAACTACAAGGATTGCAGCACAACTCAATTTCCCTCCAATCATCTCCATGATCACAAGAACATTAAATTAAAACCTCAAGACCCTTTGATTGAATCGAGAACAGGGTCCGATCAGAATAACAGTAAACTTCTTGAATTTCGACATCCGCTTAATATTAATGATAGGAGATTCTGGGACTCATCAGCTGCTTCTTCTAGCTCAAATTTGCATTCATGGAACTTGCCGCCAACACCTGCCCCCTCAAACAACTCAACTCTAGTTCATTTATCCAGAAAAGAAGGAAATGATTACTTGAAGAATGGTTTTAGGAGGAAGGCTTCAGACAGATCATTTATTCATAGGTATCACGACAACTTCTCAAGTTATGAGGGTTTCAGAGGTCTCAATACTTTTAACTACAGGAGGGTTGTTCCAAGCCCTTTTGTATATCTCAGTGCTGATGATTTTGAAGGCAGTGAGAAAGATATGGGAGATTTAGTTAGTTTTAAAACTAACACATCTGCATTCAGAAATTCAAGGACTCCCCCGGAGGGAGAGCAAGGAGATGAGTCCAATGAACGTACAGAAGCTCCTTTCATTGATTTTCTTGGCGTGGGCGTATCTTCATCATGA 1020 0.4216 MEDFSGSAGSGDNTEIPISPRGHWRPAEDEKLRQLVKQHGAQNWNSIAEKLRGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHSLHGNKWALIARHFPGRTDNAVKNHWHVIMARKQREQSKSCEKRSFHANYKDCSTTQFPSNHLHDHKNIKLKPQDPLIESRTGSDQNNSKLLEFRHPLNINDRRFWDSSAASSSSNLHSWNLPPTPAPSNNSTLVHLSRKEGNDYLKNGFRRKASDRSFIHRYHDNFSSYEGFRGLNTFNYRRVVPSPFVYLSADDFEGSEKDMGDLVSFKTNTSAFRNSRTPPEGEQGDESNERTEAPFIDFLGVGVSSS* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00980 339 Gene3D - 74 143 - -
Pte8g00980 339 PANTHER MYB PROTEIN-RELATED 21 156 - -
Pte8g00980 339 Gene3D - 21 72 - -
Pte8g00980 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Pte8g00980 339 CDD SANT 75 115 IPR001005 -
Pte8g00980 339 FunFam MYB transcription factor 21 72 - -
Pte8g00980 339 Pfam Myb-like DNA-binding domain 24 84 - -
Pte8g00980 339 MobiDBLite consensus disorder prediction 1 24 - -
Pte8g00980 339 MobiDBLite consensus disorder prediction 301 325 - -
Pte8g00980 339 CDD SANT 24 65 IPR001005 -
Pte8g00980 339 SUPERFAMILY Homeodomain-like 20 114 IPR009057 -
Pte8g00980 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 67 IPR017930 -
Pte8g00980 339 ProSiteProfiles Myb-like domain profile. 21 67 IPR001005 -
Pte8g00980 339 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Pte8g00980 339 SMART sant 72 120 IPR001005 -
Pte8g00980 339 SMART sant 20 69 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00980 Pte-Chr8 33873887 33875282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00980 18 141 MYB Transcription Factor Family AT1G17950 69.403 7.83e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte8g00980 Myb_DNA-bind_6 4.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00980 K09422 - qsu:111984334 333.569