Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00952 ATGTCAAGCAAAGCAATAACACTTTTTATCTTGTTTCTTAACATGTCATTGTTTCCTACCATTTCTGCTTTGAATCAAGAGGGTCTCTCCCTATTGTCATGGCTTTCAACCTTAAACTCTACTTCCTCGTATAGTAAGTTCTCTTCCTGGAATCAAACCCACAAAGATCCATGCAGATGGGATTATATCAAATGTTCAAACAATGGATATGTTTCAGAAATTGCAATAACCTCCATTAATCTTCAGAGTAGCTTCCCCTCTGAGCTTTTTAATTTAAGTAAACTTACCTCTCTTGTTATTTCAAATGCAAACCTCAGTGGGGAAATTCCAAGTGCAGTAGGAAACTTGTCATCACTGGTCACTCTAGACCTCAGTTTCAATGCCTTGACAGGGACAATTCCTGGAGAAATAGGAAAGCTATCTTCACTGCAATGGTTATTGTTGAATTCAAATTCATTGCAAGGTGGGGTTCCAACAGAAATCAGCAACTGCTCAAATCTTAGACAGCTTGAACTGTTTGACAACCTGCTTTCCGGAAAAATACCTACTGAAGTAGGCTTGCTGAGAAATCTTGAAATATTTCGAGCAGGTGGAAACCTTGGTATCCATGGAGAAATTCCAATGCAGATATCAAACTGCAAAGAACTTGTTTTTCTTGGTTTTGCAGATACAGGGATTTCAGGGGAGATTCCAAAAAGCATAGGAGAACTTCAGAATCTTCAGACTTTTTCAGGCTATACTGCTAATTTGACTGGTTTCATCCCACCAGAAATTCATAACTGCTCAGCTTTGGAGAATTTGTTTTTGTATGAAAACCAGCTTACTGGGAAGATTCCTGATGAGTTGGGCTCCATGAAGAACCTCAAGAGGGTACTACTGTGGCAGAACAATCTAAGTGGTAGCATCCCTGCAAGTATAGGTAACTGTTCGACTTTGGTGATGGTAGATTTCTCATTGAATTCTCTTAGTAGAGAGATTCCTATGACGCTGGGAAACTTAAATGCATTGGAGATGCTTCTTCTTTCTTACAATAACATTACTGGAGAAATACCAACTTATATCGCCAACTTTTCAAGTATGAAGCAATTGGAATTGGATAACAACAGATTTTCTGGGACAATCCCATCTGTCATTGGACAACTGAAGGAGCTCACAAGATTCTTTGCTTGGCAGAACCAGTTACATGGAAGCATACCATCAGAGCTATCCAACTGTGAGAAACTTCAAGCAGTTGATCTTTCTCACAATTTTCTCTCTGGGAATATACCAAGTTCTCTTTTTCATCTGAAAAATTTGACACAATTACTTTTGATATCTAATGGACTTTCAGGTTCTATTCCACCAGATATTGGTCACTGCACCAGCTTGATTAGACTTCGCCTGGGGTCGAACAATTTCACTGGTCAAGTTCCGCCAGAGATCGGTCATTTACATAGTTTGACCTTTCTTGAATTGTCAGAAAATATATTCAGCGGAGAGATACCACCTGAGATTGGTAACTGCACTAAGCTAGAAATGCTTGACCTGCATAGCAATAAGCTCCAAGGATTAATTCCTTCTTCCCTTGAGTACCTTACTGCACTCAATGTTTTAGATCTTTCAATGAATAGAATAATTGGCAGTATTCCTGGCAATCTAGGAAAGCTGAAGTCCTTGAATAAACTCATACTCAGGGGTAACCATATCTCAGGTTCAATTCCTAGATCACTGGGTCTCTGCAAGGATCTGCAGTTACTTGATATGAGCAGCAATAAGATTATTGATTCCATCCCGGAAGAGATTGGTCAACTGCAAGGATTGGATATCCTCTTGAATCTGAGTTGGAATGCTCTAACAGGTCCCATTCCCGAAAGCTTCTCAAATCTATCAAAGCTAGCCAACTTGGATCTCTCCCACAATAACTTGACTGGGAGTCTGAGTGTCCTGAGTAGCCTTGACAACTTGGTCTCTCTTAATGTGTCCTACAACAAATTTTCAGGTCTTCTTCCTGATACAAAGTTCTTCGAAGATCTTCCTGCCACTGCCTTCTTAGGGAACCCAAATCTATGCATTAAAAGAGATGAGTGTCACTTAAATCAAGATCTCCGTCACAGAAATTCTCGCAGAAACATCATTATCTATACTCTCGCTGGTATATTTTTAACAGTTACAGTTGTCACTTCAATAATTTTGGTTCTCAGAGTGTACAGCACCATGTTTGGGAGAAGTTATGATGAAGAAAATGAATTGCAATGGGTCTTGACACCATTTCAGAAGCTTAACTTCTCCGTTACTGATATAATTACGAGGTTATCGGATTCAAACATCATTGGAGAAGGCTGCTCAGGTGTTGTTTATAAGGTAGAGACTCCAATGAAACAAATTATTGCTGTTAAGAAGTTGTGCCCTTTAAGGTTTGGTGAATTTGAAGAGAGGGACATGTTCTCAGCAGAAGTGCAGACTCTTGGATCAATAAGGCACAAGAATATAGTGAGGCTCCTTGGGTGTTGTAACAATGGAAAAACTAGATTACTTCTATTTGATTACATTTGCAATGGAAGTTTGTCAGGACTGCTCCATGAGAAGAGGGTGTTCTTGGATTGGGATGCAAGGTACAAGATCATAGTAGGAGCAGCACATGGTTTAGAATATCTTCACCATCACTGCATTCCTCCAATTTTCCATCGTGATATTAAGACAAACAACATCCTTGTAGGACCACAGTATGAAGCTTTTCTGGCAGATTTTGGCCTTGCCAAGCTAATTCACTCTCAAGAATGTCCAAAACCTCCTTCCATAATTGCTGGTTCTTATGGTTACATTGCTCCCGAATATGGATACAGTTTGAAGATCACCGAGAAGAGTGATGTGTATAGTTATGGTGTGGTGCTCCTTGAGGTCCTAACTGGGATGGAGCCAAGTGATAGTAGGATTCCTGACGGTGATCATATTGTAACCTGGGTTAACAGAGAAATTCGGGAAAAGAGAAGACAATTCACGTCAATCATTGACCAGCAACTACTACTGCAATGTGGCACAAGAACACAAGAGATGCTTCAAGTACTAGGAATTGCTCTGCTTTGTGTAAATACAATTCCAGAAGATCGACCAACAATGAGGGACGTGACAGCAATGCTCAAGGAAATCAGGAATGAGAATGATAACTTTGACAAATCAAGTTCTCATTGCAAAGAAGCAGTTCTCAGTCCTCAAGGAACAGTTCAGTGCTCTAGCTTCTCCAGATCATCTGAACCTCTAATAGAATCATCTTCGTCATCTCCATAG 3264 0.3995 MSSKAITLFILFLNMSLFPTISALNQEGLSLLSWLSTLNSTSSYSKFSSWNQTHKDPCRWDYIKCSNNGYVSEIAITSINLQSSFPSELFNLSKLTSLVISNANLSGEIPSAVGNLSSLVTLDLSFNALTGTIPGEIGKLSSLQWLLLNSNSLQGGVPTEISNCSNLRQLELFDNLLSGKIPTEVGLLRNLEIFRAGGNLGIHGEIPMQISNCKELVFLGFADTGISGEIPKSIGELQNLQTFSGYTANLTGFIPPEIHNCSALENLFLYENQLTGKIPDELGSMKNLKRVLLWQNNLSGSIPASIGNCSTLVMVDFSLNSLSREIPMTLGNLNALEMLLLSYNNITGEIPTYIANFSSMKQLELDNNRFSGTIPSVIGQLKELTRFFAWQNQLHGSIPSELSNCEKLQAVDLSHNFLSGNIPSSLFHLKNLTQLLLISNGLSGSIPPDIGHCTSLIRLRLGSNNFTGQVPPEIGHLHSLTFLELSENIFSGEIPPEIGNCTKLEMLDLHSNKLQGLIPSSLEYLTALNVLDLSMNRIIGSIPGNLGKLKSLNKLILRGNHISGSIPRSLGLCKDLQLLDMSSNKIIDSIPEEIGQLQGLDILLNLSWNALTGPIPESFSNLSKLANLDLSHNNLTGSLSVLSSLDNLVSLNVSYNKFSGLLPDTKFFEDLPATAFLGNPNLCIKRDECHLNQDLRHRNSRRNIIIYTLAGIFLTVTVVTSIILVLRVYSTMFGRSYDEENELQWVLTPFQKLNFSVTDIITRLSDSNIIGEGCSGVVYKVETPMKQIIAVKKLCPLRFGEFEERDMFSAEVQTLGSIRHKNIVRLLGCCNNGKTRLLLFDYICNGSLSGLLHEKRVFLDWDARYKIIVGAAHGLEYLHHHCIPPIFHRDIKTNNILVGPQYEAFLADFGLAKLIHSQECPKPPSIIAGSYGYIAPEYGYSLKITEKSDVYSYGVVLLEVLTGMEPSDSRIPDGDHIVTWVNREIREKRRQFTSIIDQQLLLQCGTRTQEMLQVLGIALLCVNTIPEDRPTMRDVTAMLKEIRNENDNFDKSSSHCKEAVLSPQGTVQCSSFSRSSEPLIESSSSSP* 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00952 1087 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 843 1057 - -
Pte8g00952 1087 PRINTS Leucine-rich repeat signature 622 635 - -
Pte8g00952 1087 PRINTS Leucine-rich repeat signature 119 132 - -
Pte8g00952 1087 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 200 325 - -
Pte8g00952 1087 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 740 842 - -
Pte8g00952 1087 SUPERFAMILY L domain-like 45 394 - -
Pte8g00952 1087 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
Pte8g00952 1087 Gene3D Ribonuclease Inhibitor 280 359 IPR032675 -
Pte8g00952 1087 Gene3D Ribonuclease Inhibitor 429 690 IPR032675 -
Pte8g00952 1087 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Pte8g00952 1087 Pfam Leucine rich repeat 503 562 IPR001611 GO:0005515
Pte8g00952 1087 SUPERFAMILY Protein kinase-like (PK-like) 747 1043 IPR011009 -
Pte8g00952 1087 Gene3D Phosphorylase Kinase; domain 1 731 842 - -
Pte8g00952 1087 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Pte8g00952 1087 MobiDBLite consensus disorder prediction 1049 1087 - -
Pte8g00952 1087 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 199 - -
Pte8g00952 1087 SUPERFAMILY RNI-like 269 660 - -
Pte8g00952 1087 Gene3D Ribonuclease Inhibitor 24 181 IPR032675 -
Pte8g00952 1087 Gene3D Ribonuclease Inhibitor 182 279 IPR032675 -
Pte8g00952 1087 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 407 693 - -
Pte8g00952 1087 Gene3D Transferase(Phosphotransferase) domain 1 843 1064 - -
Pte8g00952 1087 ProSitePatterns Serine/Threonine protein kinases active-site signature. 886 898 IPR008271 GO:0004672|GO:0006468
Pte8g00952 1087 SMART serkin_6 764 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte8g00952 1087 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 512 1039 - -
Pte8g00952 1087 ProSiteProfiles Protein kinase domain profile. 764 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte8g00952 1087 SMART LRR_typ_2 477 501 IPR003591 -
Pte8g00952 1087 SMART LRR_typ_2 429 453 IPR003591 -
Pte8g00952 1087 SMART LRR_typ_2 502 524 IPR003591 -
Pte8g00952 1087 SMART LRR_typ_2 140 164 IPR003591 -
Pte8g00952 1087 SMART LRR_typ_2 285 309 IPR003591 -
Pte8g00952 1087 SMART LRR_typ_2 357 381 IPR003591 -
Pte8g00952 1087 SMART LRR_typ_2 333 356 IPR003591 -
Pte8g00952 1087 SMART LRR_typ_2 116 139 IPR003591 -
Pte8g00952 1087 SMART LRR_typ_2 525 548 IPR003591 -
Pte8g00952 1087 SMART LRR_typ_2 622 644 IPR003591 -
Pte8g00952 1087 SMART LRR_typ_2 645 678 IPR003591 -
Pte8g00952 1087 SMART LRR_typ_2 549 573 IPR003591 -
Pte8g00952 1087 SMART LRR_sd22_2 573 592 - -
Pte8g00952 1087 SMART LRR_sd22_2 622 647 - -
Pte8g00952 1087 SMART LRR_sd22_2 381 404 - -
Pte8g00952 1087 SMART LRR_sd22_2 333 359 - -
Pte8g00952 1087 SMART LRR_sd22_2 501 527 - -
Pte8g00952 1087 MobiDBLite consensus disorder prediction 1055 1087 - -
Pte8g00952 1087 Pfam Protein kinase domain 767 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte8g00952 1087 ProSitePatterns Protein kinases ATP-binding region signature. 770 793 IPR017441 GO:0005524
Pte8g00952 1087 Gene3D Ribonuclease Inhibitor 360 428 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00952 Pte-Chr8 33608896 33613024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00952 23 1077 Receptor kinase-like Gene Family AT5G56040 46.783 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pte8g00952 Pkinase 9.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00952 - - qsa:O6P43_015058 1559.66