Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00939 ATGGACGACAGTTTATCTGAGTTTGCAAACACAAACTTCGGAGGAGATGATTTGTTTGCCCTTTTGGAGAGCTTGGATGGTGTCACTGACTTTGCTTCAATTGATGAAGCCACTGGTCTTAGCCCGAAAGAGAAGGAAGGGTTAGTGTCACAGAAGTGTAATTCTTCAAGTACACCACAAGAATACTCAGAAACTGAGCTTGAAACATCACCAAAGTGCAAGCGACAAAAGCTTGCTGACACATCTAATTCCGAGGAAGCTAACACAGATGGACAGAACAGGATGTCTCATATCACAGTGGAACGCAACCGAAGAAAGCAAATGAACGAGCATTTGTCTGTTCTCAGGTCTCTCATGCCTTTCTTTTACGTCAAAAGAGGGGATCAAGCATCGATAGTTGGTGGTGTAGTTGATTACATCAATGAGCTGCAACAAGTGCTACAATCCCTTGAAGCCAAGAAAAAGAGAAAAGTTTACAGCGAGGTTCTGAGCCCTAGATTTGTTCCGAGTCCAAGATCTTCGCCACTAAGTCCAAGAAAGCCACCTCTAAGCCCTAGACTAAACTTACCTATTAGTCCACGAACCCCACAACCAAGTAGCCCTTACGGACCAAGGATGCAACAAGGTTACCTCACTCCCACGCTTACTAGTCCCCTCGAACCATCTCCTATATCTTCTGCTTCCTCCATCATTAACAATGATAGCGTCAATGAGCTGTTTGCTAACTCTAAGTCCGCCATTGCCAATGTGGAAGTCAAGTTCTCTGGTCCAAACCTTCTTTTGAAAACTGTTTCTCATCGTATACCAGGTCAAGCTATGAAAATCATTTCAGCCCTTGAGGAACTCTCTCTTGAAATCCTCCATGCGAGCATCAGTACCGCCAAAGACACCCTTCTATATTCCTTCACTATCAAGATTGGAATTGAATGCCAACTTAGTGCGGAGGAACTGGCTCACCATATCCAGCAAACATTCTGCTAA 981 0.4424 MDDSLSEFANTNFGGDDLFALLESLDGVTDFASIDEATGLSPKEKEGLVSQKCNSSSTPQEYSETELETSPKCKRQKLADTSNSEEANTDGQNRMSHITVERNRRKQMNEHLSVLRSLMPFFYVKRGDQASIVGGVVDYINELQQVLQSLEAKKKRKVYSEVLSPRFVPSPRSSPLSPRKPPLSPRLNLPISPRTPQPSSPYGPRMQQGYLTPTLTSPLEPSPISSASSIINNDSVNELFANSKSAIANVEVKFSGPNLLLKTVSHRIPGQAMKIISALEELSLEILHASISTAKDTLLYSFTIKIGIECQLSAEELAHHIQQTFC* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00939 326 MobiDBLite consensus disorder prediction 48 66 - -
Pte8g00939 326 MobiDBLite consensus disorder prediction 171 200 - -
Pte8g00939 326 Gene3D - 82 157 IPR036638 GO:0046983
Pte8g00939 326 CDD bHLH_AtFAMA_like 95 166 - -
Pte8g00939 326 PANTHER TRANSCRIPTION FACTOR FAMA 14 325 IPR044283 GO:0003700|GO:0010052
Pte8g00939 326 MobiDBLite consensus disorder prediction 42 105 - -
Pte8g00939 326 FunFam Transcription factor SPEECHLESS 84 158 - -
Pte8g00939 326 SMART finulus 98 149 IPR011598 GO:0046983
Pte8g00939 326 MobiDBLite consensus disorder prediction 201 220 - -
Pte8g00939 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 92 143 IPR011598 GO:0046983
Pte8g00939 326 MobiDBLite consensus disorder prediction 82 96 - -
Pte8g00939 326 MobiDBLite consensus disorder prediction 67 81 - -
Pte8g00939 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 165 IPR036638 GO:0046983
Pte8g00939 326 MobiDBLite consensus disorder prediction 167 220 - -
Pte8g00939 326 Pfam Helix-loop-helix DNA-binding domain 94 144 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00939 Pte-Chr8 33498561 33500405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00939 7 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 51.603 3.09e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte8g00939 HLH 6.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00939 K20558 - tcc:18605715 397.127