LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte8g00931	ATGGAGTGCAACAAAGATGAAGCAGTTAGGGCTAGAGATATAGCTGAGAGAAAATTTACAGAAAGGGATTATATCGGTGCAAAAAAATTTGCTCTCAAGGCCCAGAATTTATTTGCGGATTTGGAGGGTGTTTCCCAATTTTTGACGATTCTTGATGTTTTTATCGCCTCAGAGATTAAAGTAAGTGGTGAGATCGATTGGTATGGCATACTTGGTGTGAGCTCTTTTGCTGATGAAGACACAATTAGGAAACAGTACAGGAAGTTGGCACTCAATCTGCACCCTGATAAAAACAAGTCTGTAGGTGCAGAGGGTGCATTTAAGTTGGTTTCCGAGGCCTGGAGTTTGTTGTCTGATAAATCTAAAAGATTAACATACAATCAGAAGAGGAGTGTGAAGATACCTTCACGGAACCGTCAAGCGCACGGCAGATCCCAAGCAGCAGCTTCCAATTCAAATGGTTATCATAATTTCTCCAGTAATGTATCTTCAAATATGAGGACAACAAACAGCTCAAGATCAGGTGTCACCTCTGTTCCTTCTCAATTTAAAAGGCCAGACACGTTTTGGACTGTTTGCAAGAGGTGCAAGACACATTACGAGTACCTCAGGGTTTATCTAAATCATACACTCCTTTGCCCTAATTGTAGTGAGGCTTTCTTGGCTACAGAGAGGCCTCCGCCTCCCAGTGTCTTGAAGTCTAGTAATTGGTCTTCTCAACCGCAGAATCAAAATTTAAGACAAAACACAACTAGAAATCAACCAGTTAATCCTGGCATGCAGTGGGGTCCTCAATCAAAGGCTGCTGGTTTTGGTAGTATGGTTGGATCTTCTTCTGCTGCTGCTCAAGCTGCAAGTGTTGTGCAACAGGCAAGTGAAAAATTGAAGAGAGACCGTGAAGGTTCGAATTCAACTACTGAATGGGAGAGGAATAATACATCCAAGGTGAATGGTGATTCATTTCAAAGTTCAGATGGGCCCTCAAAGAAGAGAAAGATAGATGATGTTCCCTCGAATGGTTGTGCAGGCTACATGGGAAACCAGATGGGCATGGGCCATGCGACTTCTGGCTGGGAAAGAATTTTTGGCTCACTGAAAAAAAACAATTGTGGACCAGAGAAGAGCTATGCCTTTTCTGGTTCTAGTACGAGGTTACACTGTCAGAGAGAATTGTCAACGTTTGAAATACGCAAGATGTTAATGGATAAAGCCAAGGATGAAATTCAAAATAAACTTGAAGGATGGAGATCAGCAACTAAGCCAAAGGTTGCAAATATAGGTAAGAAACAAAAAATCCCATTACGTGGTAGCACCATTAATTCAACAAACTGTGTTGGGGATGTAGATAATAGCAAAAGCAATCGAACTAGTAATTCTGTCTCTGGCAAGTCTGATGCTGATGGAAATGAGCAGGATCCAGCCCCAATGATTATTAATGTTCCTGACCCAGACTTTCACAATTTTGACATGGACCGAACTGAGAATTCTTTTCGTGAGGACCAGGTATGGGCGGTATATGATGATGATGATGGAATGCCTCGATTCTATGCTCGAATTCACAAGGTGATCTCTTTGGAACCATTTAGGGCACGAATCAGTTGGCTAAATTATAGGAGTAACGTTGAGTTGGGGCCATTAGATTGGGTAGACTCTGGGTTTACAAAAACTTGTGGGGATTTCAGGGCAGGCAAGCACGAAATAACTGAAATGTTAAATTCTTTCTCGCACAAAGTGAGTTGGACAAAAGGGACTCGTGGCATTATCAGAATATTCCCTACAAAGGGTGAAGTCTGGGCTATTTACAGAAACTGGTCCTCTGACTGGAATGAGCAGACTCCTGATGATGTTATTCACAAGTATGACATGGTGGAGGTGCTAGAAGATTTTAGTGAGGAACAGGGTGTCTCTGTTGCTCCACTGACTAAGGTTACTGGTTTCCGAACAGTATTCCAAATGCAGAAGGACCCTATGGAGGTCAGATGGATACCTAAAGAAGAAATGTTTCGCTTCTCTCATCAAGTTCCCAATCATTTGCTTACCGGTGAAGAAGCTCATAATTCTCCAATGGGGTGTCGAGAGCTGGATCCGGCTGCAACACCTTTGGATCTCCTTCAGGCAACAACCGAAGCTAACGATACGTCAGGGACATGA	2151	0.4268	MECNKDEAVRARDIAERKFTERDYIGAKKFALKAQNLFADLEGVSQFLTILDVFIASEIKVSGEIDWYGILGVSSFADEDTIRKQYRKLALNLHPDKNKSVGAEGAFKLVSEAWSLLSDKSKRLTYNQKRSVKIPSRNRQAHGRSQAAASNSNGYHNFSSNVSSNMRTTNSSRSGVTSVPSQFKRPDTFWTVCKRCKTHYEYLRVYLNHTLLCPNCSEAFLATERPPPPSVLKSSNWSSQPQNQNLRQNTTRNQPVNPGMQWGPQSKAAGFGSMVGSSSAAAQAASVVQQASEKLKRDREGSNSTTEWERNNTSKVNGDSFQSSDGPSKKRKIDDVPSNGCAGYMGNQMGMGHATSGWERIFGSLKKNNCGPEKSYAFSGSSTRLHCQRELSTFEIRKMLMDKAKDEIQNKLEGWRSATKPKVANIGKKQKIPLRGSTINSTNCVGDVDNSKSNRTSNSVSGKSDADGNEQDPAPMIINVPDPDFHNFDMDRTENSFREDQVWAVYDDDDGMPRFYARIHKVISLEPFRARISWLNYRSNVELGPLDWVDSGFTKTCGDFRAGKHEITEMLNSFSHKVSWTKGTRGIIRIFPTKGEVWAIYRNWSSDWNEQTPDDVIHKYDMVEVLEDFSEEQGVSVAPLTKVTGFRTVFQMQKDPMEVRWIPKEEMFRFSHQVPNHLLTGEEAHNSPMGCRELDPAATPLDLLQATTEANDTSGT*	717

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte8g00931	716	PANTHER	BNAC03G44070D PROTEIN	1	700	-	-
	Pte8g00931	716	MobiDBLite	consensus disorder prediction	306	324	-	-
	Pte8g00931	716	SUPERFAMILY	Chaperone J-domain	60	126	IPR036869	-
	Pte8g00931	716	SMART	dnaj_3	65	122	IPR001623	-
	Pte8g00931	716	Pfam	DnaJ domain	66	127	IPR001623	-
	Pte8g00931	716	MobiDBLite	consensus disorder prediction	437	466	-	-
	Pte8g00931	716	PRINTS	DnaJ domain signature	102	122	IPR001623	-
	Pte8g00931	716	PRINTS	DnaJ domain signature	68	86	IPR001623	-
	Pte8g00931	716	PRINTS	DnaJ domain signature	86	101	IPR001623	-
	Pte8g00931	716	MobiDBLite	consensus disorder prediction	290	339	-	-
	Pte8g00931	716	MobiDBLite	consensus disorder prediction	129	182	-	-
	Pte8g00931	716	ProSiteProfiles	dnaJ domain profile.	66	130	IPR001623	-
	Pte8g00931	716	Gene3D	DnaJ domain	64	176	IPR036869	-
	Pte8g00931	716	MobiDBLite	consensus disorder prediction	225	274	-	-
	Pte8g00931	716	MobiDBLite	consensus disorder prediction	229	261	-	-
	Pte8g00931	716	CDD	DnaJ	66	119	IPR001623	-
	Pte8g00931	716	ProSitePatterns	Nt-dnaJ domain signature.	107	126	IPR018253	-
	Pte8g00931	716	Pfam	Domain of unknown function (DUF3444)	476	683	IPR024593	-
	Pte8g00931	716	MobiDBLite	consensus disorder prediction	437	475	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte8g00931	Pte-Chr8	33426488	33430891	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte8g00931	4	232	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	31.915	2.36e-30	121

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte8g00931	-		-	qsa:O6P43_019898	875.159