Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00923 ATGTCGTCGACGGTACTGGAAACGACTCGGGCGACTCACGAGGAAGTGGAGCGGGTCGAAAGACTCATTGTGAAAGAGCTACAGGAAGCGCCAGCAAGCCAAAAGGAACGCTTGTATCAGAGTCACCGAGTACTGAAGATGATAGACCGCATTGTCTCCAAAACTGAACAACTCGTTGACGTTTATGAAGACAAAGATAATGTTAGGAAGGATGAGATTGAGGCTTTAGGAGGTCAAACTGCAAGTGGGAAGAATGTGTTCAGTGCCTTCTATGATAGGCTCAAAGAGATCAGAGAGTACCATAGGAAGCATCCAGCCGCCCGTTTTGTCAGCACGGAGGATGAGATTGAAGCAGAATACAAACAGGAGCCAGTAATTGAATTCAGTGGCGAGGAAGCTTTTGGTAGATATTTGGATTTGCACGTGTTGTACAATCAGTACATCAATTCCAAATTTGGAGAGCCTGTCGAGTATTCTAAGTATGTTGACGAGTTTTCACAACTGCAGAAGATCCCTCGAAGATTGAAAATGACTAGGCAGTATAAGGAATATCTGACAAACCTATTTGACTATCTTTCTTTCTTCTTCTTCCGGACTGAACCCTTGCAAGACCTTGATAGGATTTTCTCCAGGGTAGAAACTGATTTTGAAGAGAAATGGGCAAATGGCAAGGTGGAAGGATGGGAGGATGATGTTCACGAAAACGGACACCTGCCTGCTGACCACAATGTAATTGATCTTGATTATTACAGCACTATTGAAGAGTTGATGGAAGTAGGTCCCGAAAGGTTAAAAGAGGCGCTTACTGCATTAGGACTAAAGGCAGGTGGTACTTTACAGCAAAGAGCTGAGAGGCTTTTCCTTACAAAGCATACACCTCTAGAAAAGTTGGACAAAAAACATTTTGCTAAGGGTCCACGTCCCACAGAACAAAATGGAGCTACTGTAGTTCCAAAACAGGAAGACAATAGGAAAGAAATTGCTCTGATGGAAGCCAAAATTGAAAAACTATGCGATTTGTTGAATGAGACCATTGAACGGACTAAAGATAACATTGTGAAGAAGCAATCCCTAACCTACGACGAGATTGTGGAAGACCGTGAAGAGGAAGAGACAGAAGTAGATGCTGAGAGTGATGATGAAGATCAGCAGATATATAATCCCCTCAAGTTGCCAATGGGCTGGGATGGAAAGCCTATACCTTACTGGCTGTATAAACTGCATGGCCTGGGGCAGGAATTTAAGTGTGAGATATGTGGAAACTATAGTTATTGGGGGCGTAGAGCTTTTGAGCGACATTTTAAAGAATGGCGACACCAACATGGAATGCGTTGCCTTGGTATACCGAACACCAAGAACTTCAATGAGATCACATCAATTGAGGAAGCGAAAGAATTATGGAAGAAAATACAGGAGAGACAAGGAGTAAACAAATGGCGCCCAGATCTTGAGGAGGAATATGAAGATAGAGAGGGCAATATCTACAACAAGAAGACATTTACTGATCTGCAGCGCCAGGGATTGATTTAA 1530 0.4314 MSSTVLETTRATHEEVERVERLIVKELQEAPASQKERLYQSHRVLKMIDRIVSKTEQLVDVYEDKDNVRKDEIEALGGQTASGKNVFSAFYDRLKEIREYHRKHPAARFVSTEDEIEAEYKQEPVIEFSGEEAFGRYLDLHVLYNQYINSKFGEPVEYSKYVDEFSQLQKIPRRLKMTRQYKEYLTNLFDYLSFFFFRTEPLQDLDRIFSRVETDFEEKWANGKVEGWEDDVHENGHLPADHNVIDLDYYSTIEELMEVGPERLKEALTALGLKAGGTLQQRAERLFLTKHTPLEKLDKKHFAKGPRPTEQNGATVVPKQEDNRKEIALMEAKIEKLCDLLNETIERTKDNIVKKQSLTYDEIVEDREEEETEVDAESDDEDQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQERQGVNKWRPDLEEEYEDREGNIYNKKTFTDLQRQGLI* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00923 509 Coils Coil 327 347 - -
Pte8g00923 509 ProSiteProfiles Zinc finger matrin-type profile. 414 445 IPR000690 GO:0003676|GO:0005634|GO:0008270
Pte8g00923 509 Pfam Replication stress response SDE2 C-terminal 223 304 IPR025086 -
Pte8g00923 509 Coils Coil 360 380 - -
Pte8g00923 509 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 174 IPR031774 -
Pte8g00923 509 Pfam SF3a60/Prp9 C-terminal 390 509 IPR024598 GO:0000398|GO:0003723|GO:0005681
Pte8g00923 509 PANTHER SPLICING FACTOR SF3A-RELATED 244 310 - -
Pte8g00923 509 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00923 1 510 C2H2 Transcription Factor Family AT5G06160 72.353 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00923 K12827 - qsa:O6P43_019923 825.854