Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00920 ATGATTTTTCCGTTTTCAGATTACGTAGACAGATTTCAGTGTCAGCCTGAATTGACTGACTGTCAAGCTTCCGAACTTCACTTGGCAATGGAGGAGGCATTTTTAGCAGAAGAGGGCTTTAGAGAAAAGCTGATAGATGTTATAAACCTGGGAGTAGGCGACACTGATGAATTCCACTATAGAGGTATCCAAGTGGCCACTGGTTCAAACCTAGATGCAGACTGTTACCACATTAAGGGCTTGTTCTCAAAACGGAAAGACTCAAGACCTTGTGAAGGTTGTGGGTTGAGCCTTCCTTGCAAGTCTTCAAAAAACATAAGTTCTTCTCCTGGCTGGCAGTTTTTGTGTAAAAAATGCACCAAGTTAAACCCAAAGCATCATTGTGGCATATGCAAGAAATTTTGGAACCATTCTGAGAGTGGGAGTTGGGTACGTTGTGATGGATGTAAGGTGTGGGTGCATGCTGAATGTGACAAAATTCCCAGCGACCTTTTCAAGAATCTGGGAGGCACTGATTATTTCTGCCCAAGTTGCAAAGCAAAGTTTGATTTTGAATTATCTGATTCAGAAAAGCCACTGGCAAAAGCCAAATGCCAGAAAAGTAATGCAAAAGTGGTGCTGAGCAACCAAGTTGCCGTTCTTTGCAATGGCGTGGAAGGCATATATTATCCAAGCCTGCATTCAGTGGTGTGCAAATGTGGTTTCTGCGGAACAGAAAAGCAAGCACTAAGTGAATGGGAAAGGCATGCAGGTTCTAAGTCAAGAAATTGGAGGACTAGTGTCAAGGTGAAAGATTCCAAGTTGCCTCTGGAACAATGGATGCTGCAGTTGGCAGAATTTCATGCAAATGCTATTGTCTCTGCGAAACCTAAGCGACCATCTTTGAAAGAAAGAAAGCAAAAGTTGCTCAATTTTTTGCAAGAAAAATATGAACCTGTTCATGCTAAGTGGACAACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGACTACAACAAAATTATCATTTGCAACAGATGTCAAATTGCCATCCATCAAGAATGCTATGGGGCTAGAAATGTTCGAGATTTCACTTCATGGGTTTGCAAAGCATGTGAAACACCTGACATTCGGCGGGAATGTTGCCTATGCCCTGTCAAAGGTGGTGCTTTAAAGCCTACTGATGTTGAAACATTGTGGATTCATGTGACATGCGCTTGGTTCCGTCCAGAAGTGTCCTTTGCAAGTGATGAAAAGATGGAACCTGCTTTAGGAATATTGAGCATACCCTCCAATGCTTTTGTGAAGATTTGCGTTATCTGCAAGCAAATTCATGGTTCATGCACACAATGTTGCAAGTGTTCAACTTATTACCATGCCATGTGTGCATCGAGGGCTGGATATCGAATGGAGCTGCATTGCTTAGAGAAAAATGGTAAACAGATCACGAAGATGATTTCTTTCTGCGCTTATCACAGGGCTCCGAATCCAGACAATGTTCTAATCATACAAACCCCATTTGTCGTCTTTTCTGCCAAAAGTCTAATCCAAACTAAGAAGAAGGCAGGCTCTAGGCTAATCTCATCTAACAGAGCAAATTTAGAAGAGGTCTCTATGTTGCATAATGAGTTGGAGTCATTTTCTGCTGCTAGGTGTCGTGTCTTTAAGAGGACCAACACTGGCAAAAAGCGAGAAGCAGATGAAGCTGTTGCACATAGAGTGAAACATCATAGCCAACATCCGTGGGATACAATGCAGAAATTAAATAAACACACTGATGTACAGGAGGAGGCTGTGACATTTTCTTCTTTTAGGGAACGACTTCACTACTTACAGAGGACTGAAAAGGACCGGACTTGCTTTGGGAGATCTGGCATACATGGATGGGGCCTCTTTGCACGCAGAAACATTCAAGAGGGGGAGATGGTGATTGAATATCGCGGTGAGCAGGTGAGGCGTAGCATTGCAGATATGAGAGAAGCACATTACAGATTGGAAGGCAAAGACTGCTATCTCTTCAAAATCAGTGAAGAAGTGGTGGTGGATGCTACTGATAAAGGAAATATTGCCCGCCTGATTAACCACTCTTGCATGCCAAACTGCTATGCGAGGATTATGAGTGTGGGTGATGATGAAAGCAGAATTGTACTCATTGCCAAGACTAACGTGCATGCGGGTGATGAGCTAACGTATGACTACTTATTTGATCCAGATGAACCTGACGAATTTAAAGTCCCTTGTCTGTGTAAAGCTCCAAACTGCCGCCAGTTCATGAATTAG 2265 0.4287 MIFPFSDYVDRFQCQPELTDCQASELHLAMEEAFLAEEGFREKLIDVINLGVGDTDEFHYRGIQVATGSNLDADCYHIKGLFSKRKDSRPCEGCGLSLPCKSSKNISSSPGWQFLCKKCTKLNPKHHCGICKKFWNHSESGSWVRCDGCKVWVHAECDKIPSDLFKNLGGTDYFCPSCKAKFDFELSDSEKPLAKAKCQKSNAKVVLSNQVAVLCNGVEGIYYPSLHSVVCKCGFCGTEKQALSEWERHAGSKSRNWRTSVKVKDSKLPLEQWMLQLAEFHANAIVSAKPKRPSLKERKQKLLNFLQEKYEPVHAKWTTERCAVCRWVEDWDYNKIIICNRCQIAIHQECYGARNVRDFTSWVCKACETPDIRRECCLCPVKGGALKPTDVETLWIHVTCAWFRPEVSFASDEKMEPALGILSIPSNAFVKICVICKQIHGSCTQCCKCSTYYHAMCASRAGYRMELHCLEKNGKQITKMISFCAYHRAPNPDNVLIIQTPFVVFSAKSLIQTKKKAGSRLISSNRANLEEVSMLHNELESFSAARCRVFKRTNTGKKREADEAVAHRVKHHSQHPWDTMQKLNKHTDVQEEAVTFSSFRERLHYLQRTEKDRTCFGRSGIHGWGLFARRNIQEGEMVIEYRGEQVRRSIADMREAHYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVHAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRQFMN* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00920 754 SUPERFAMILY SET domain 602 754 IPR046341 -
Pte8g00920 754 ProSiteProfiles Extended PHD (ePHD) domain profile. 373 488 IPR034732 -
Pte8g00920 754 Pfam PHD-finger 128 180 IPR019787 -
Pte8g00920 754 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 370 IPR013083 -
Pte8g00920 754 ProSiteProfiles Post-SET domain profile. 738 754 IPR003616 -
Pte8g00920 754 CDD PHD_ATX3_4_5_like 321 367 IPR042011 -
Pte8g00920 754 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 490 IPR013083 -
Pte8g00920 754 FunFam Histone-lysine N-methyltransferase 586 754 - -
Pte8g00920 754 FunFam Histone-lysine N-methyltransferase 371 490 - -
Pte8g00920 754 ProSiteProfiles Zinc finger PHD-type profile. 125 181 IPR019787 -
Pte8g00920 754 CDD PHD_TCF19_like 128 178 - -
Pte8g00920 754 CDD ePHD_ATX3_4_5_like 376 487 IPR041955 -
Pte8g00920 754 SMART set_7 612 735 IPR001214 GO:0005515
Pte8g00920 754 FunFam Histone-lysine N-methyltransferase 309 370 - -
Pte8g00920 754 ProSiteProfiles SET domain profile. 612 729 IPR001214 GO:0005515
Pte8g00920 754 PANTHER PHD FINGER PROTEINS 198 734 - -
Pte8g00920 754 Pfam PHD-zinc-finger like domain 375 487 - -
Pte8g00920 754 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 183 IPR013083 -
Pte8g00920 754 ProSiteProfiles Zinc finger PHD-type profile. 319 370 IPR019787 -
Pte8g00920 754 Pfam SET domain 623 728 IPR001214 GO:0005515
Pte8g00920 754 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 754 IPR025780 -
Pte8g00920 754 SUPERFAMILY FYVE/PHD zinc finger 319 384 IPR011011 -
Pte8g00920 754 SMART PHD_3 432 488 IPR001965 -
Pte8g00920 754 SMART PHD_3 321 368 IPR001965 -
Pte8g00920 754 SMART PHD_3 127 179 IPR001965 -
Pte8g00920 754 CDD SET_SETD1-like 599 750 - -
Pte8g00920 754 SUPERFAMILY FYVE/PHD zinc finger 125 182 IPR011011 -
Pte8g00920 754 Gene3D SET domain 515 754 IPR046341 -
Pte8g00920 754 Pfam PHD-finger 334 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00920 Pte-Chr8 33216497 33223611 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00920 322 487 C2H2 Transcription Factor Family AT3G14740 31.792 4.49e-19 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte8g00920 zf-HC5HC2H_2 2.4e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00920 - - qsa:O6P43_019925 1270.76