Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00907 ATGAGGAGAGAGTGCGGTGTATATTGGAGAAAGAAAGGCAAGGAAAAACTAACAAGTAAAGCAGTACAGAGTGCCATTGTTTTGGATTTGGCTAGAGCTTTGGGGATCGACCCAGATAATCAAGCTGAGTTAACTGAACAGATAAAGCTGTTTAAGAATGATCTTTCGCGATCTAATTTAGTATCTGAGAAGAAGATATTGGTGTCTTTAGATAGGATTTTAGATAGTTGGTCTGTGGATTCTAGCATTATCACTAGAAAAATGGATTTTGATTTTGAAGATGATGCATCTATGTTGCCTTTCAAGAATTTCCTATGCCCACTTACTAAAGAAGTCATGAAAGATCCTGTCGTGTTGGAGTCCTCTCAAACTTATGAAAGAAGTGCTATTGAGTATTGGTTTGAGACGTGTATAGAGGACGGTCGAGATCGGACATGTCCAGTTACAGGGCAGATTATTGAGTCATTGGAGTTGAAACCCAATGTCGGGTTGGCAGGGGCAATTGAAGAGTGGGCTAATAGGATAACTGATTATCAGGTCAAATCTGCCGTGCAGCATCTGAGTGAAGAACCACAACCACTGTCAGTTGATGCCATTGAAAAGGTTTTGGATGACATTTGTAAGATTTCAGAAGAGAATCCGATTAGCAGACATAAAATAAGGAATGCTGGCATTGTGCTGCTGATTGTGAAGGTCCTTAGAAACAACTCGAAGATTGTTGGAACACTTTTGAGAAGCAAAGCACTCTTGGCTTTACATAGTATGTCCAAAGATGAAGAAAGTAGGGACATAATGATTGAAGAGGGTATCGCAAGACTGGCCATACATAGCCTTATTGGAAGGTCCGAAAAAGAGAGAGAGTATGCTGTGAAGTTATTAATGGAATTATCAAAGGATGAAGCTTCTTGTGCAAGAGTTGCATCTGAGAAAGGGTCACTAGTTCTTCTGTCAAGCATGGCTGAGAACCTGGATTATCCAGTGTTATCCAATTTAGCAGAAGGACTCCTAAAACAGATGGAGAGAGTAGAGAACAATGTCCAACTTCTGGCAGCAGCTGGAAGATTTGATCCCTTGCTTACTCGGTTATGTGAAGGCTCTGATAGTGTTAAAATAAAGATGGCATCTTTGGTGGGAAGTATGACTTTGACAAATAGCAGTAAAGAGGAAATTGCCCGTCAAAGTGCTAAAGTACTTGTTGACTTGTTGTCTAAGCAGGAGGGGAGGGCACCAAGTTTGCAAGCTTTATCTAATTTATCAGCATTGGTTGACAATGCATCCATACTTGTTGATTCTGATGTACTGCCATCTCTCATTAGCATTCTCTTTGAGAATGGGGATCCTTCATCAGAGTTGAAGGAATTGGCTGCATCAACAATTGCAAACATCGTGTCAAAGCCAGGTTGCTGGGAGTTGGCATTTGTAGATAAGAAAGGGCATTCAATGCAGTCTGAGACTATTATACACAGACTTGTAGAATTGCTAAGGATTACTTCTCTTGGTTGTCAAGCATCTGTACTACAAATTCTATGTGGACTTACATCGTCTCCGCAGGCATCAGAGTCAGTTTGTTCGATTATCAAGTCAGGAGATGGTCTCAATGTAATTTTAACATTTCTTGAATGCCAAGATCTTGAGCACAGAGTCTATGCTTATAAGCTAGCAAGAGTACTCTCTGGATGGTTTTGGTCAGGATCTTGGAAATGCTCTGAGAATTGCAGATAA 1722 0.4053 MRRECGVYWRKKGKEKLTSKAVQSAIVLDLARALGIDPDNQAELTEQIKLFKNDLSRSNLVSEKKILVSLDRILDSWSVDSSIITRKMDFDFEDDASMLPFKNFLCPLTKEVMKDPVVLESSQTYERSAIEYWFETCIEDGRDRTCPVTGQIIESLELKPNVGLAGAIEEWANRITDYQVKSAVQHLSEEPQPLSVDAIEKVLDDICKISEENPISRHKIRNAGIVLLIVKVLRNNSKIVGTLLRSKALLALHSMSKDEESRDIMIEEGIARLAIHSLIGRSEKEREYAVKLLMELSKDEASCARVASEKGSLVLLSSMAENLDYPVLSNLAEGLLKQMERVENNVQLLAAAGRFDPLLTRLCEGSDSVKIKMASLVGSMTLTNSSKEEIARQSAKVLVDLLSKQEGRAPSLQALSNLSALVDNASILVDSDVLPSLISILFENGDPSSELKELAASTIANIVSKPGCWELAFVDKKGHSMQSETIIHRLVELLRITSLGCQASVLQILCGLTSSPQASESVCSIIKSGDGLNVILTFLECQDLEHRVYAYKLARVLSGWFWSGSWKCSENCR* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00907 573 Gene3D - 174 559 IPR011989 -
Pte8g00907 573 Coils Coil 332 352 - -
Pte8g00907 573 SMART Ubox_2 103 171 IPR003613 GO:0004842|GO:0016567
Pte8g00907 573 CDD RING-Ubox_PUB 104 158 IPR045210 -
Pte8g00907 573 SUPERFAMILY ARM repeat 195 553 IPR016024 -
Pte8g00907 573 SUPERFAMILY RING/U-box 100 174 - -
Pte8g00907 573 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 17 558 - -
Pte8g00907 573 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 173 IPR013083 -
Pte8g00907 573 ProSiteProfiles U-box domain profile. 99 178 IPR003613 GO:0004842|GO:0016567
Pte8g00907 573 Pfam U-box domain 103 173 IPR003613 GO:0004842|GO:0016567
Pte8g00907 573 SMART arm_5 258 298 IPR000225 GO:0005515
Pte8g00907 573 SMART arm_5 421 464 IPR000225 GO:0005515
Pte8g00907 573 SMART arm_5 383 420 IPR000225 GO:0005515
Pte8g00907 573 SMART arm_5 213 257 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00907 Pte-Chr8 32788632 32792053 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00907 101 561 U-box Gene Family AT1G20780 34.322 6.11e-66 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00907 - - qsa:O6P43_014055 764.992