Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00874 ATGGTCAAAAGCAAAATAATGGAGAGTGAGCATACTACCTTGTTGTCTACAGGAAAATTTGAGAACTTCAGCTGGCAGCAGCAACCTGAAACTCTGTTCAGGAAGAAAATGAGCGAGCATGAAAAGAAAAGAAGGTTTACTGATGAACAGATAAGAGCCTTGGAGTTCATGTTTGAATCAGAGGGAAAACTAGAGCCAAGAAAGAAATTGCAACTGGCAAAAGAGCTTGGGCTGCAACCTAGACAGATTGCTATCTGGTTCCAGAACAGAAGAGCCAGATGGAAGGTTAAACAGATAGAGCAAGACTACAGAGAGCTTAGAGTTGATTATGACACTTTACTGTCACGTTTTGAGTCTCTGAAGAAAGAAAATGAGTCATTACAAGACGAGTTCGAGAGGCTGAGACACAGGACAGGAAGATCGGATGAAGCTGTAAGAGAAAACGAGGTTGTAATCAAAGGAAATAATCTCAGAGGTCGAGGGATAGTAGATGGTGCAAAATTGATCATGTGGGAGGCTGGCAAAAAAGCATCTTGCTCAAATGGGGGGCTAGATGACATTGGAGGACTTCACTTACTTGATGAGAAGAAAAGTAACTGTAGTTACTTAGAGGACAAGAACGGACCCTTGACATCAACTGAGAAATGGTACAGTGTTGATCCGCGTGGTATGCTTGATCAGTCATGTACCAATTCTCATTGGTTAGACATCTGGACTTAA 720 0.4194 MVKSKIMESEHTTLLSTGKFENFSWQQQPETLFRKKMSEHEKKRRFTDEQIRALEFMFESEGKLEPRKKLQLAKELGLQPRQIAIWFQNRRARWKVKQIEQDYRELRVDYDTLLSRFESLKKENESLQDEFERLRHRTGRSDEAVRENEVVIKGNNLRGRGIVDGAKLIMWEAGKKASCSNGGLDDIGGLHLLDEKKSNCSYLEDKNGPLTSTEKWYSVDPRGMLDQSCTNSHWLDIWT* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00874 239 Gene3D - 37 103 - -
Pte8g00874 239 CDD homeodomain 42 98 IPR001356 GO:0003677
Pte8g00874 239 ProSitePatterns 'Homeobox' domain signature. 72 95 IPR017970 GO:0000981|GO:0006355
Pte8g00874 239 PRINTS Lambda-repressor HTH signature 77 93 IPR000047 GO:0003677
Pte8g00874 239 PRINTS Lambda-repressor HTH signature 68 77 IPR000047 GO:0003677
Pte8g00874 239 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 34 175 IPR045224 GO:0003700
Pte8g00874 239 Pfam Homeodomain 42 95 IPR001356 GO:0003677
Pte8g00874 239 SMART HOX_1 40 101 IPR001356 GO:0003677
Pte8g00874 239 FunFam Homeobox-leucine zipper protein ATHB-7 26 97 - -
Pte8g00874 239 SUPERFAMILY Homeodomain-like 41 107 IPR009057 -
Pte8g00874 239 Coils Coil 89 137 - -
Pte8g00874 239 ProSiteProfiles 'Homeobox' domain profile. 37 97 IPR001356 GO:0003677
Pte8g00874 239 Pfam Homeobox associated leucine zipper 97 137 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00874 Pte-Chr8 32253617 32254956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00874 31 240 Homeobox Transcription Factor Family AT2G46680 40.741 6.96e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte8g00874 Homeodomain 2.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00874 K09338 - gmx:100499926 203.371