Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00870 ATGGCAGACTCCTTGGGTTTTCCTTTTACAAATGCACAGTGGAAGGAGCTTCAAAGACAAGCAATGATTTACAAGTACATGGTGGCCTCTGTTCCCGTTCCTCCTGATCTTCTAATTCCTCTTACCAGAGGCACCCCTGTCTCAGATAACTCTCACTCTCCTTTGGACGGAGGATTCAACCTAAGGTTGGCAAGCGGTGCTGATCCGGAACCAGGTAGGTGCAGAAGAACTGATGGCAAAAAATGGAGATGCTCCAGAGATGTGGCTCCTAATCACAAGTATTGTGAGCGTCACATGCACAGAGGCCGTCCCCGTTCAAGAAAGCCTGTGGAAGTTCATGCCAACAATACAAGCAGCAGCAGTCACCACATCAAGAAGAGTCGCTATGATTACAATGCTTTTTCTTCTACATCCCCTGTTACTGTTGCTATTTCAAACCCCACAAAAACTAGCTCTTCGGCTAGCTTCCTCTCCCCTGCTATGAATCAACCATTCCCTCAGTCACCAGTTTCTCTTGATAAATTTGTTTTCAAAGCTACAAACTTTGATTCCATGACTTCACTCTCGTCAGATAAAGAACCCAGGGGCTTGGACTGGATGCTGAAAGACGATGCAGTTTCCTTGGCTCATTCTAATCTATGGCAGCCTTTGATTCAGACCAAAATTGGCTTGTCAACTGAGAGCTCATGCCAGGACAGTATCTCTCTGTCTAATCCAAATTATGAAGATTCTATGTTCCTGAACTCGTATGCAATTTTCAGTTCTGGAGAACAGCAAAATAGAGACTGTCCTCTGTTTTTCAACCCTGATATACTTCCAATGGAAAACAACCCTCAATCAGAAAATTGCAGAGGTTTCATTGATGCATGGTCTAATTCAAAAACACACGAGAACAATACCCATCAAAGAACCGAGAGTTGTGTTTCCCCGAATGGTAAATTATCTCTTTCTTCGTTAAATTTATCCATGGTTACCAACGGTGCCAGGGATGAGGACATGGGTGATATCCACATGGGGTTGGGCCTGATGGGGACTAATTGCAACACTGACAATGGTACTAAATCTCATCTCTCAAGTTGGGTATCCTCGACACCAGGTGGTCCATTAGCTGAAGTATTAAGGCCAAGCACAGTTCCTGCTACCAAAGATGCAGCCTCCAACCCATCCTCTCCAGTCGTTACAAATAGTGAATCTGGAAGTCCTATGCCAACTGTGGCATCATCACCATCTGGGGTTCTGCAAAAGACAGTTAATTCTTTATCTGACAGTAGCACCGCTAGCAGCCCTACTAATGCAACTTCAAGGGCTAATTCTGAGATGGCAATGCTATGGACAAGTCAGAACAAATTAGCATCTTCCACTTAA 1365 0.4447 MADSLGFPFTNAQWKELQRQAMIYKYMVASVPVPPDLLIPLTRGTPVSDNSHSPLDGGFNLRLASGADPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVEVHANNTSSSSHHIKKSRYDYNAFSSTSPVTVAISNPTKTSSSASFLSPAMNQPFPQSPVSLDKFVFKATNFDSMTSLSSDKEPRGLDWMLKDDAVSLAHSNLWQPLIQTKIGLSTESSCQDSISLSNPNYEDSMFLNSYAIFSSGEQQNRDCPLFFNPDILPMENNPQSENCRGFIDAWSNSKTHENNTHQRTESCVSPNGKLSLSSLNLSMVTNGARDEDMGDIHMGLGLMGTNCNTDNGTKSHLSSWVSSTPGGPLAEVLRPSTVPATKDAASNPSSPVVTNSESGSPMPTVASSPSGVLQKTVNSLSDSSTASSPTNATSRANSEMAMLWTSQNKLASST* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00870 454 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pte8g00870 454 MobiDBLite consensus disorder prediction 100 122 - -
Pte8g00870 454 Pfam WRC 69 111 IPR014977 -
Pte8g00870 454 ProSiteProfiles WRC domain profile. 68 112 IPR014977 -
Pte8g00870 454 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pte8g00870 454 PANTHER GROWTH-REGULATING FACTOR 5 8 323 IPR031137 GO:0005634|GO:0006351|GO:0032502
Pte8g00870 454 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pte8g00870 454 MobiDBLite consensus disorder prediction 379 454 - -
Pte8g00870 454 MobiDBLite consensus disorder prediction 380 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00870 Pte-Chr8 32226850 32228935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00870 1 373 GRF Transcription Factor Family AT4G24150 31.407 6.01e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Pte8g00870 WRC 4.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00870 - - qsa:O6P43_014940 549.28