Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00867 ATGGCGGTTGCTGAGAATGCTGGGGCTAAAATCGGCTCCTCCAATCAAAATTTGGACGACAGTGTAGTATCATCGGACACCACTGGACCTGATGTTGAGAAATCAAAACCAAAAACTGACTTCTCGAGCAACGTGGCTAACGCGTCCGACAGCGGCGATCCGAACGTGGAGGTGTTGCCACAGCAAGATGGAGCTCAGGACACTTTGTCTGTGACTAAGGTCGCGCAGATGCAAAATGGGTTTGACTCCAATGGCGTCCAGAACCAGCAGATGTCTGGAAAGAATGGTGGCTACGGGATTAATCAAATGTCTATTGGGGTCAGAAATGGTTCCGATGGAGATGAAAATTTTAAGCGTGATATTAGGGACTTGGCGGAATTGCTATCCAAGTTGAATCCCATGGCTGAGGAGTTTGTACCTCCATCCTATGCAAAGAATCAAGGCTATTTTGCAGCTGCTGCTGGAGCTTTTGGTTTCGGTAACAACTTTATACTCGAAACTGATCTTGGCGATGCTAATGGCCCAGCTAATAGAAGGAGGAAGAATGGCTATAATCAGGGAAAGCGAAGGCTGTATCATAAAATGGACATGGAGAAGCGAGAAGAGATGATTAGGAGGACAGTCTATGTGTCTGACATTGATCAACAGGTTACTGAAGAGCAGTTGGCAGCCCTCTTTCTCAATTGTGGTCAGGTTGTTGATTGCCGTGTTTGTGGTGATCCGAATTCTATCCTCCGTTTTGCTTTTATTGAGTTCACTGACGAAGAAGGTGCAAGGGCTGCTTTGAGCCTCTCTGGAACGATGCTTGGATATTACCCAGTTAGAGTGCTGCCTTCTAAAACTGCAATTGCACCTGTCAATCCATCATTCTTACCCCGGTCTGAAGATGAGCGAGAGATGTGTTCAAGAACCATATACTGTACAAACATTGACAAGAAGGTGACTCAAGCGGATGTCAAACTCTTCTTTGAATCACTTTGTGGGGAGGTTCATCGCTTGAGGCTTCTTGGTGATTATCATCATTCTACTCGCATCGCTTTTGTTGAGTTCATGATGGTAACCACCATGCGCTCTATTTGTAATGGTTACACCATTTCATTATTTGTCTTTGTATATATTAATCCTTTGAATACATGCATTTGGCTCTGCAATAAGGTAGTATGTTACATTCACAGGTTTAAATTCTCTATATGTTTTGTTGATTATTGTTCACGTAAAATTTTACCTATATTTCCAATGTGTAATGAAAGTGATTCTTCTTGTATCTTATTGATATCACATTATAATTTTGGCATGCCGAATAACAATAGGTCCCCTAGACATCAAGTAGAAGGTTGA 1338 0.4275 MAVAENAGAKIGSSNQNLDDSVVSSDTTGPDVEKSKPKTDFSSNVANASDSGDPNVEVLPQQDGAQDTLSVTKVAQMQNGFDSNGVQNQQMSGKNGGYGINQMSIGVRNGSDGDENFKRDIRDLAELLSKLNPMAEEFVPPSYAKNQGYFAAAAGAFGFGNNFILETDLGDANGPANRRRKNGYNQGKRRLYHKMDMEKREEMIRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALSLSGTMLGYYPVRVLPSKTAIAPVNPSFLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVHRLRLLGDYHHSTRIAFVEFMMVTTMRSICNGYTISLFVFVYINPLNTCIWLCNKVVCYIHRFKFSICFVDYCSRKILPIFPMCNESDSSCILLISHYNFGMPNNNRSPRHQVEG* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00867 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 350 IPR000504 GO:0003723
Pte8g00867 445 FunFam Polyadenylate-binding protein-interacting protein 11 171 283 - -
Pte8g00867 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 281 IPR000504 GO:0003723
Pte8g00867 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 351 IPR000504 GO:0003723
Pte8g00867 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 270 IPR000504 GO:0003723
Pte8g00867 445 MobiDBLite consensus disorder prediction 9 30 - -
Pte8g00867 445 Gene3D - 296 362 IPR012677 -
Pte8g00867 445 Pfam Ataxin-2 C-terminal region 128 142 IPR009818 -
Pte8g00867 445 SUPERFAMILY RNA-binding domain, RBD 206 356 IPR035979 GO:0003676
Pte8g00867 445 MobiDBLite consensus disorder prediction 39 60 - -
Pte8g00867 445 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 126 355 - -
Pte8g00867 445 CDD RRM1_CID8_like 204 283 IPR034823 -
Pte8g00867 445 SMART rrm1_1 207 277 IPR000504 GO:0003723
Pte8g00867 445 SMART rrm1_1 304 372 IPR000504 GO:0003723
Pte8g00867 445 MobiDBLite consensus disorder prediction 1 60 - -
Pte8g00867 445 Gene3D - 167 283 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00867 Pte-Chr8 32211322 32216716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00867 205 350 Eukaryotic Initiation Factors Gene Family AT1G34140 24.161 6.02e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00867 - - qsa:O6P43_014935 546.584