Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00836 ATGAGGTTCCGAATTACCTCCAGCTTTTTTAAGATGGACATAAACCATACAAAACCTCCCGCACTTTCAGGTGTACTGCGAAATGAAGTAGCTTGGTTTGACAAACCTGAAAACAGTGTTGGTTCACTGACTTCACGTATCATCAGTGATGCATCAATGATAAAAGTCATAATTGCTGACCGTATGTCAGTGATTGTCCAATGCATTTCCTCCATAATGGTAGCAACAATTGTGAGCATGGTTGTCAATTGGAGAATGGCTCTGGTGGCTTGGGCTGTGATGCCCTGTCACTTCATAGGGGGCCTGATTCAAGCTAAGTCTGCCAAAGGATTTTCAGGAGATCACTCTGCATTTCATCATGAAGTTGTTGAACTTGCTTCTGAGTCCACAACCAACATTAGAACAATAGCATCATTTTGCCACGAAGAGCATGTCATCAGCAAAGCAAAAATAGCTCTGGAAATTCCACAAAGGAAGAGCAGAATACGAAGTGTCAAGTACGGAATTATTCAAGGGTTTTCACTTCTATTATGGAACATTGCACATGCTGTTGCTTTGTGGTACACAACAATATTGGTTGAACGACATCAAGCTAAATTTGAAAATGGCATCAGAGCATACCAGATTTTCTCTCTCACAGTTCCTTCCATAACTGAATTATGGACACTAATTCCCACTGTGATATCTGCAATCAATATACTAACTCCATTGTTCCAAACCCTTGACCGAAAAACTGAAATTGAGCCAGATGTACCAAGAGGTTCAGACGCTGAAATTATCACACCTAAAGTTGCATTTCAGAATGTAAAGTTCAACTATCCTACAAGGCAAGAAGTCACTGTTCTTGATGGTTTTAGTTTACAAATTGACGCCGGATTGAAGGTGGCTCTAGTTGGACCAAGTGGGGCAGGTAAATCCTCTGTTTTGGCCCTTCTATTGAGATTCTATGACCCCACGGATGGAAAGATATTCATAGATGGGAAAGACATCAAAGAATATAACTTGAGAAGGGTAAGAGCACAGATAGGATTGGTGCAACAAGAACCACTCCTTTTTAGTTCCTCGATTAGAGAAAACATTTGCTATGGCAACAATGAAGCTACAGAGAGTGAAATTGTAGAAGTTTCAAAAGATGCAAACATACATGATTTTATCAGTAGCCTGCCAGATGGATATGACACTGTGGTAGGGGAGAAGGGCTGCCAACTTTCAGGAGGACAAAAGCAAAGAATAACGATTGCAAGAACCTTGTTGAAGAAGCCTTCAATTTTACTTTTAGATGAAGCTACAAGTGCTCTTGATGCGGAGTCTGAAAGAATAATTGTCAGTGCCTTGGAGTCCTTATACCTAAAGGGAAAAAGAGGCTTAGATTTGAAAATCACTCAGATTACTGTTGCACATAGATTGTCAACAGTTATAAACTCAGATACCATAGTTGTCATGGAGAAAGGCAAGATTGTGGAGATGGGGACTCACTCAACACTGATTGCAGGAACAGAAGGGGGAGTATACTCAAGGTTATACAGCTTACAAAGCTTAGGAAAAAAATTGATTTAG 1557 0.4027 MRFRITSSFFKMDINHTKPPALSGVLRNEVAWFDKPENSVGSLTSRIISDASMIKVIIADRMSVIVQCISSIMVATIVSMVVNWRMALVAWAVMPCHFIGGLIQAKSAKGFSGDHSAFHHEVVELASESTTNIRTIASFCHEEHVISKAKIALEIPQRKSRIRSVKYGIIQGFSLLLWNIAHAVALWYTTILVERHQAKFENGIRAYQIFSLTVPSITELWTLIPTVISAINILTPLFQTLDRKTEIEPDVPRGSDAEIITPKVAFQNVKFNYPTRQEVTVLDGFSLQIDAGLKVALVGPSGAGKSSVLALLLRFYDPTDGKIFIDGKDIKEYNLRRVRAQIGLVQQEPLLFSSSIRENICYGNNEATESEIVEVSKDANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRITIARTLLKKPSILLLDEATSALDAESERIIVSALESLYLKGKRGLDLKITQITVAHRLSTVINSDTIVVMEKGKIVEMGTHSTLIAGTEGGVYSRLYSLQSLGKKLI* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00836 518 FunFam ABC multidrug transporter mdr4 262 513 - -
Pte8g00836 518 Pfam ABC transporter 282 431 IPR003439 GO:0005524
Pte8g00836 518 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 25 229 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte8g00836 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 511 IPR027417 -
Pte8g00836 518 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 264 508 IPR003439 GO:0005524
Pte8g00836 518 SUPERFAMILY ABC transporter transmembrane region 24 249 IPR036640 GO:0005524|GO:0016020
Pte8g00836 518 CDD ABC_6TM_Pgp_ABCB1_D2_like 21 247 - -
Pte8g00836 518 ProSitePatterns ABC transporters family signature. 403 417 IPR017871 GO:0005524|GO:0016887
Pte8g00836 518 CDD ABC_MTABC3_MDL1_MDL2 264 511 - -
Pte8g00836 518 Gene3D - 255 516 IPR027417 -
Pte8g00836 518 SMART AAA_5 291 485 IPR003593 GO:0016887
Pte8g00836 518 Gene3D ABC transporter type 1, transmembrane domain 10 251 IPR036640 GO:0005524|GO:0016020
Pte8g00836 518 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 22 507 IPR039421 -
Pte8g00836 518 Pfam ABC transporter transmembrane region 24 202 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00836 Pte-Chr8 31852212 31853768 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00836 22 511 Calmodulin-binding Proteins AT2G36910 43.232 9.62e-126 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00836 K05658 - qsa:O6P43_014878 781.556