Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00825 ATGGAGACTTCCGGCTCAAGTTCTGAGACCAATTATGTAAATTCCCGTTCTGTATCTGCCGGCGGCGAAAATAGCAATAGTGATAATAATAATAATGGCAATAATACAACAAACTCTTGGTTTGGTATGCAAATCCCTGGTTCTCTGAACCATTTTAGATCACCGCTTTCTTTCTTTTTAGAGTATTCCGGGATTCTTAGGTCTACTACGGTGATGGCGCGTGATTCTACTGGCGTAGATAATGGAGTAAGAGCTCCTGAATTTCGACCTGAGCTTCGTGATCATGCGCGGAACTGTGCGTCTGCAATTGCATGCAGCAGTGAAGGTTCTGGCAGTAGTACTGGGGAGGTTTCAATTCGGATTATTGGTAATGGGGACCAAGATAATAGTGTTGGGTCAGGGACAGCTTCTCTGTCATCACAGAATGAGGTTGGTTTTGAAGATAGTAGTGGTTTGATGGGGAGTAGAGGTAGGATCTCAGCGTTGCATAGTGAGGAAGGTAGCAGCGGAGTTGTTGCAGGAGAAAGGGTGCCATTAGTGGCATCATCATCATCTCTGTCAGATGGGAATGGAGTAGCTGATGGGGATGGTGCTAATGAATTTAATGGTAACACTGTTGATTCGTCATCTTATCAAAGATACGATATCCAACAGATTGCGAGGTGGATAGAACAGATTCTTCCTTTCTCATTGTTGTTACTGGTGGTTTTCATTCGACAGCATTTGCAAGGTTTCTTTGTTACAATTTGGATTTCAGCCATCTTGTTCAAATCAAATGATATTGTGCGGAAGCAAACAGCTCTAAAGGGAGATAGGAGGACCTCAGTTCTTTTTGGCATCTCTATGCTGTTCATTCTTCATGTAATCTTCATTTATTGGTGGTACCAAAATGATGACATTCTATATCCATTGGTCATGATTCCTCCAAAGACTGTGCCTCCATTCTGGCATGCTATATTCATAGTTCTGGTAAATGATACAATGATGAGGCAGGCTGCAATGGCTATCAAATGTTTGCTTCTTATCTACTATAAGAATGGAAGAGGCCACAACTTCCGTCGCCAGGGTCAAATGTTAACCCTAGTTGAGTATGCACTTCTGCTGTATCGTGTTTTGCTACCAACACCAGTCTGGTACCGTTTTTTCTTGAACAAGGACTACGGAAGCCTATTTTCATCACTGACTACAGGATTGTATTTAACTTTCAAATTAACATCTGTTGTTGAGAAGGTCCAATGTTTCTTTTCTTCCTTGAAAGCGTTATCTCGGAAGGAAGTACATTATGGGGTGAATGCCACGCTGGAACAGGTCAATGCAGCAGGTGATCTCTGTGCCATTTGTCAGGAGAAGATGCATGCTCCAATCATTTTGCGCTGTAAACATATCTTCTGTGAGGAGTGTGTCTCTGAATGGTTTGAGAGAGAACGAACTTGCCCACTATGCAGGGCATTGGTGAAATCAGCAGATCTAAGAACCTTTGGGGATGGATCCACAAGTCTCCTGTTTCAGTTATTCTGA 1518 0.4262 METSGSSSETNYVNSRSVSAGGENSNSDNNNNGNNTTNSWFGMQIPGSLNHFRSPLSFFLEYSGILRSTTVMARDSTGVDNGVRAPEFRPELRDHARNCASAIACSSEGSGSSTGEVSIRIIGNGDQDNSVGSGTASLSSQNEVGFEDSSGLMGSRGRISALHSEEGSSGVVAGERVPLVASSSSLSDGNGVADGDGANEFNGNTVDSSSYQRYDIQQIARWIEQILPFSLLLLVVFIRQHLQGFFVTIWISAILFKSNDIVRKQTALKGDRRTSVLFGISMLFILHVIFIYWWYQNDDILYPLVMIPPKTVPPFWHAIFIVLVNDTMMRQAAMAIKCLLLIYYKNGRGHNFRRQGQMLTLVEYALLLYRVLLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCFFSSLKALSRKEVHYGVNATLEQVNAAGDLCAICQEKMHAPIILRCKHIFCEECVSEWFERERTCPLCRALVKSADLRTFGDGSTSLLFQLF* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00825 505 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 28 505 IPR044235 GO:0061630|GO:1904294
Pte8g00825 505 ProSitePatterns Zinc finger RING-type signature. 459 468 IPR017907 -
Pte8g00825 505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 419 492 IPR013083 -
Pte8g00825 505 SMART ring_2 444 481 IPR001841 -
Pte8g00825 505 SUPERFAMILY RING/U-box 435 487 - -
Pte8g00825 505 MobiDBLite consensus disorder prediction 125 144 - -
Pte8g00825 505 Pfam Zinc finger, C3HC4 type (RING finger) 442 487 - -
Pte8g00825 505 ProSiteProfiles Zinc finger RING-type profile. 444 482 IPR001841 -
Pte8g00825 505 MobiDBLite consensus disorder prediction 1 39 - -
Pte8g00825 505 CDD RING-HC_RNFT1-like 442 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00825 Pte-Chr8 31777825 31781834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00825 50 506 C3H Transcription Factor Family AT5G01960 60.349 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00825 - K22379 qsa:O6P43_020068 691.804