Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00817 ATGGGGAGGAAAAAGAGTCGCCCGCATCGATCAGGTGGAATAATTCTTGATACCCATGATGCAAGTGAAGCTGAATTAGGTGTGCAGCAAGTGATTGAAGCAGAGAAAGAAGAAAAGAACAGCTCCACTGCAATTGATCAACCTTTCTTTGTCAAAGTCGATAGGAGTGGTTGGTTTGTAAATGAACACCTTGATATATCTGAACTTGTTTTAACAGATTTGAATTTCAGAGAAGGTTTTTCCGATTTTGACCTCAGCGAGGAAACTTTTAAGGATTCTGAGTATAACTTGAGATTTCGGTTGTCCAATGTTAGTGAGTTCCTTGGTCGCATTAAATTAGGCCACTGGCCTGTTTTGACGTGCACTGATATTTCATTGGAGTTGGTCAAAACAAATTTGAAGGACCATGTAGAAACATGTACTGTGTTTTTATCTGGGCTTTTTGATGGACCTGATGAGGGTATTTCTGGTCTCGTTCACTTGACAAGTTTAAAGTTTTTTACATTGAGGCCAATTCTCGGCATTAAAGTTTCAGAGGAAACACGTTCGCTCAGGGTGAGGGTAGAAATACTGAAGAGTGCCTTTGATGCATGTGAGTCTCTCCTTGAGAGTCCCAGGCAAATATGGAAGAAGAGCATGATAAATCTTATGTCTTGGGTTCGGCCTGAAGTTATGACTTCAGAGGTCAGGTATGGCATCTGTAGATCAATGGACACGGAAGTTGATTCACAGACAAGGAGGGCAAATGACACCTGTGGAAGAAGCTATTCAAGATTCGACGTGGCATCATTTTATGAAGCCATTAAACCATCAAAAACAGATCCTATGATTGAAGATAACATAGGTGGCTTACTTCCTGAGATGAGACCGTATCAAAGACGAGCTGCTTATTGGATGTTACAAAGAGAAAAAGAAGAACCGTTGTGTCTGGGAGCAAGAAAAAGGGACCAGTTTTATTCTCCTTTATGTGTGCCTATAAATTTTCTTGATACGTGCTCAAAAATGTTTTTTAATCCCTTCAGTGGAAATGTATCATTGGACCCAGAGCCGACTCCACCAAATGTATTTGGGGGAATCCTCGCTGATGAGATGGGTCTTGGGAAAACTGTGGAACTGCTTGCTTGCATCTTTGCTCATAAGAAACCAGAAACAGGAAATACAATTTTATCTGAATCTGATGAGAAACGTCAGGTTACTAGGGACAACATCAACAAGCTCAGCAGATTGAAAAGGGAACGTGTGGAGTGTATATGCGGAGCTGTCACTGAAAGCATCAAATATAGAGGATTGTGGGTTCAATGTGATGTCTGTGATGCTTGGCAGCATGCAGACTGTGTTGGTTATACTGCAAAAGGCAAATCTTTGAAATCAAAGCAAGGGTGTGAAAGCAGGAAATATAAAACCACCATTGCTGTGAGGGAAGGTGAATATGTTTGCCAGATATGCTCTGAACTAATACAAGCAACTGAATCTCCTATTGTTTCTGGTGCCACTCTTATAGTCTGTCCAGCTCCTATTTTACCTCAATGGCATGGCGAAATCATTCGGCATACAGAACCAGGGACATTAAAGACGTGCATCTATGAAGGTGTCAGAGAAACTTCTTTCTCAAGTACATATCTTGTGGACATCAGTGAACTTGCCAGTGCTGATATAGTGTTGACAACTTATGATGTACTTAAAGAGGATTTGTCGCATGATTCAGATAGGTTTGAAGGTGATAGGCGCTTCATGAGATTTCAGAAAAGGTACCCGGTTATCCCAACAATTCTTACAAGAATATTCTGGTGGAGGGTTTGTTTAGATGAGGCTCAAATGGTAGAGAGCAATGGTGCTGCTGCTACTGAAATGGCCATGCGCCTTTATGCTAAGCATCTTTGGTGCATTACAGGGACACCTATACAACGCAAACTTGATGACTTATATGGACTTCTAAGATTTCTTAAGGTCTCACCTTTCAACGTTTTCAGGTGGTGGAATGATGTTATTCGAGATCCTTACGAGAGAGGCGATCAAAGAGCGATGGAATTCACTCACAAGCTCTTCAAACAAATCATGTGGCGGTCCTCAAAAGTGCATGTGGCTGATGAGTTGCACCTTCCCCCACAGGATGAATGCATCTCTTGGCTTACTCTTTCCCCAGTAGAAGAGCATTTTTACCAGAGACAACATGAAACTTGTGTCAGCTACGCTCATGAAGTTATAGAAAGATTGAGAAATCATATTCTAAAACGAGGGGTGGAAGGTGGTTTATCTTCTGATACTCTAATTACTCACTCAGAGGCTGGAAAGCTTCTGAACACACTCCTCAAACTTCGCCAAGCATGTTGTCATCCTCAGGTTGGAAGTTCTGGGTTGCGTTCTCTACAACAGTCACCTATGAGTATGGATGAAGTATTATTGGTTCTTCTAGGTAAGACGAAGATAGAAGGTGAGGAAGCTCTCAGGAGGTTAGTTGTGGCTATAAATGGGCTTGCAGCTATAGCCATAATTGAGAAGAACTTTCTACAAGCTGTGGTGCTTTACAAAGAAGCATTAGCTTTTGCCGAAGAGCATTCTGAAGACTTCCGCCTGGATCCATTGTTGAATATACACATTCATCATAATCTTGCGGAGACAATTCCACAAACCACAAAATATCCTGAATGTATCTCCAATGGAAATCAGGTCCTTGAGAACACAGAAATTAAGGCCTGCAAGATACATTGTAATAATGAAAATAGTCCTTCCAGAAAGAGGCAAAAATTGGATAACTCAAACAGCGTGGCATTCAAAGTTGATTTGGAGGCACCGTTTGACAACACAAGTATTTTGTTCAAAGACAAAGAACTTACTCATGTTCCAAATAAATCAGCTTGTAGTTTGTGTGTACAATGTTTAAGAACAACGTGTGAAACTTTTGTACAGAGGTACTTATCAGCATACCAGTCAAAGTTGTCAGTTGCTCAACAAGATTTTCAAAAAATCTTCTTGCAGGTGTGCAATTCTTTTAGTGACAGAACAGCTGAGCATATGGACTGGTGGCTGGAAGCCCTTCATTATGCTGAGCAGAACAAGGATTTCTTTCATGAGTTGATGAGAAAGATTGAAGAAGCAATTGTGGGATCTTCAAACACTTCAAAATCTTCTAGAATTACAGCACGTTTCCGTAGTATAAATGCTCTGAAATATCACGTTCAGATGGGGTTGGATCAATTGGAAGCCTCTAGGAAATTGGTGCTTGATCGACTCATTGAAATTGATCAGACTATGGAGAAACCAAATGAAGAGGACATTGAACGTGCAGGCAACTGTCGAAATTGCCAGGGTATTCGTGATGGCCCTGAATGCATTATGTGTGAATTGGATGGATTATTTCAGAAATATGAGGCAAGGCTCTTTCATCTCCAAAAAGAACGTGGAGGTATTATTACATCTGCTGAGGAGGCTGTAGATTTACAAAAGAAAGAATCTGCACTCAATCGATTCTACTGGAATTTGTCAAAATCAAATAAGAAAACAAATCCTTCTAATGATTTTGAAGAATCGAAAAAGAGAGGTGCTAAAGAGAAAATTGTGGTTAAAAAGTCAGCATCTCAATTAGAAGTGATTCTTGGAGTCATAAAAAGTCATTGCAAGACTCAGTTGGGAAGGGAGGGTGTCGCTGCAGCCAACAAGCTCTTGAGCATTTTTGAGGGAATGAGGAAGGAGTATCCCCATGCTAGGTCTTTGGCTATGGCTCAAGCACAGTACCTGCAAGCTCATGATGAAATAAAGATGGCAAAATCTCGGAAGTATCTGAGAGAAAATGAGAACGACAAATCTCCCTATACTTTGGATGAAAATGAACTTCCAGTATACAGTACAGACTGCTCTCATGATAAGTTCATATCTTTGACTTTGTTGATGCAGGTCAAAGGAAAACTCCGTTACTTAAAGGGCCTAGTACGATCTAAGCAAACGGCCATGGACAGTCCAGAGACTTCCTCATTAACGGAAGAGATCACTACTCTGTCCAACTGTGCTGAAGAGAAGAGTGGGTGTATACCTAAAATTGAAGAGACATGCCCAGTCTGTCAAGAAAAGCTAAGCAATGAGAAAATGGTCTTTCAATGTGGGCATGTCACATGCTGCAAATGTTTAGTTGCTATGACTGAACATAGACTACATGAAAACAAGTTTCAAGGTAAATGGGTAATGTGCCCAACATGTCGACAACATACTGATGTCAGAAACATTGCTTATGCTGTTGATGAGCAGAATGGTAATTCTGCTGCACATAATATGATGGAAGGCTATGAAAAATCTGAAGTATCTGTCATGGTCAAAGGTTCATATGGAACTAAGATTGAAGCAATCACGAGAAGAATCTTGTGGATCAAGTCTACATATGCAAGAGCTAAAGTTCTTGTGTTCTCGAGCTGGAATGATGTCCTTGACGTGTTGGAGCATGCTTTCTGTACCAATAGTATTTCCTACGTTCGAATGAAAGGAGGCAGGAAAGCCCATATTGCAATTAGTGAGTTTAGGGGACAGAGCAAGAGAACGAAAGGGTCCAAAAAAACTCAGTCCCAGGAATCAACATCAGAGCCTATTCAGGTTTTACTACTCTTAATTCAACATGGAGCCAATGGCCTTAATCTTCTTGAAGCAGAACACGTAGTACTTGTAGAGCCATTGCTGAATCCAGCTGCAGAAGCACAGGCAATCAGCAGGGTGCATCGAATTGGGCAGGGAAATAAGACTCTTGTTCATCGCTTTCTGGTTAAAAACTCTGTTGAAGAGAGTATATATAGATTGAACAGAAGCAGAAGCGGAAATTTATTCATCAGTGAAAATACAAAAAACCAAGATCAACCAGTTTTGACACTGAAAGATGTTGAATCTCTATTTGAAATGCCATCAAAGGTGCCCGAAATTGATGAAAAACCTGAGACAAGTCTGAGGGACCTACCACCTTCAGTTGCTGCTTCAATCGCAGCTCAAAGGAGACTGGATGAACAAGCAAGATGA 4992 0.4083 MGRKKSRPHRSGGIILDTHDASEAELGVQQVIEAEKEEKNSSTAIDQPFFVKVDRSGWFVNEHLDISELVLTDLNFREGFSDFDLSEETFKDSEYNLRFRLSNVSEFLGRIKLGHWPVLTCTDISLELVKTNLKDHVETCTVFLSGLFDGPDEGISGLVHLTSLKFFTLRPILGIKVSEETRSLRVRVEILKSAFDACESLLESPRQIWKKSMINLMSWVRPEVMTSEVRYGICRSMDTEVDSQTRRANDTCGRSYSRFDVASFYEAIKPSKTDPMIEDNIGGLLPEMRPYQRRAAYWMLQREKEEPLCLGARKRDQFYSPLCVPINFLDTCSKMFFNPFSGNVSLDPEPTPPNVFGGILADEMGLGKTVELLACIFAHKKPETGNTILSESDEKRQVTRDNINKLSRLKRERVECICGAVTESIKYRGLWVQCDVCDAWQHADCVGYTAKGKSLKSKQGCESRKYKTTIAVREGEYVCQICSELIQATESPIVSGATLIVCPAPILPQWHGEIIRHTEPGTLKTCIYEGVRETSFSSTYLVDISELASADIVLTTYDVLKEDLSHDSDRFEGDRRFMRFQKRYPVIPTILTRIFWWRVCLDEAQMVESNGAAATEMAMRLYAKHLWCITGTPIQRKLDDLYGLLRFLKVSPFNVFRWWNDVIRDPYERGDQRAMEFTHKLFKQIMWRSSKVHVADELHLPPQDECISWLTLSPVEEHFYQRQHETCVSYAHEVIERLRNHILKRGVEGGLSSDTLITHSEAGKLLNTLLKLRQACCHPQVGSSGLRSLQQSPMSMDEVLLVLLGKTKIEGEEALRRLVVAINGLAAIAIIEKNFLQAVVLYKEALAFAEEHSEDFRLDPLLNIHIHHNLAETIPQTTKYPECISNGNQVLENTEIKACKIHCNNENSPSRKRQKLDNSNSVAFKVDLEAPFDNTSILFKDKELTHVPNKSACSLCVQCLRTTCETFVQRYLSAYQSKLSVAQQDFQKIFLQVCNSFSDRTAEHMDWWLEALHYAEQNKDFFHELMRKIEEAIVGSSNTSKSSRITARFRSINALKYHVQMGLDQLEASRKLVLDRLIEIDQTMEKPNEEDIERAGNCRNCQGIRDGPECIMCELDGLFQKYEARLFHLQKERGGIITSAEEAVDLQKKESALNRFYWNLSKSNKKTNPSNDFEESKKRGAKEKIVVKKSASQLEVILGVIKSHCKTQLGREGVAAANKLLSIFEGMRKEYPHARSLAMAQAQYLQAHDEIKMAKSRKYLRENENDKSPYTLDENELPVYSTDCSHDKFISLTLLMQVKGKLRYLKGLVRSKQTAMDSPETSSLTEEITTLSNCAEEKSGCIPKIEETCPVCQEKLSNEKMVFQCGHVTCCKCLVAMTEHRLHENKFQGKWVMCPTCRQHTDVRNIAYAVDEQNGNSAAHNMMEGYEKSEVSVMVKGSYGTKIEAITRRILWIKSTYARAKVLVFSSWNDVLDVLEHAFCTNSISYVRMKGGRKAHIAISEFRGQSKRTKGSKKTQSQESTSEPIQVLLLLIQHGANGLNLLEAEHVVLVEPLLNPAAEAQAISRVHRIGQGNKTLVHRFLVKNSVEESIYRLNRSRSGNLFISENTKNQDQPVLTLKDVESLFEMPSKVPEIDEKPETSLRDLPPSVAASIAAQRRLDEQAR* 1664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00817 1663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1343 1418 IPR013083 -
Pte8g00817 1663 CDD SF2_C_SNF 1439 1581 - -
Pte8g00817 1663 CDD DEXQc_SHPRH 288 689 - -
Pte8g00817 1663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 688 IPR027417 -
Pte8g00817 1663 SMART ultradead3 284 658 IPR014001 -
Pte8g00817 1663 Gene3D - 353 405 IPR038718 -
Pte8g00817 1663 Gene3D - 483 708 IPR038718 -
Pte8g00817 1663 Gene3D - 1419 1639 IPR027417 -
Pte8g00817 1663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 697 1626 IPR027417 -
Pte8g00817 1663 SUPERFAMILY RING/U-box 1348 1403 - -
Pte8g00817 1663 ProSitePatterns Zinc finger PHD-type signature. 416 482 IPR019786 -
Pte8g00817 1663 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 3 1656 - -
Pte8g00817 1663 SMART ring_2 1349 1397 IPR001841 -
Pte8g00817 1663 SUPERFAMILY FYVE/PHD zinc finger 411 484 IPR011011 -
Pte8g00817 1663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 406 482 IPR013083 -
Pte8g00817 1663 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 488 651 IPR014001 -
Pte8g00817 1663 SMART helicmild6 1473 1570 IPR001650 -
Pte8g00817 1663 ProSiteProfiles Zinc finger RING-type profile. 1349 1398 IPR001841 -
Pte8g00817 1663 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1445 1621 IPR001650 -
Pte8g00817 1663 CDD PHD_TCF19_like 417 482 - -
Pte8g00817 1663 SMART PHD_3 415 483 IPR001965 -
Pte8g00817 1663 Pfam SNF2-related domain 291 781 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00817 Pte-Chr8 31648968 31661973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00817 490 779 RAD5 or RAD16-like Gene Family AT5G22750 31.525 1.29e-38 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte8g00817 SNF2_N 1.2e-86 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00817 K15710 - qsa:O6P43_014858 2275.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte8g00817 8 31648968 31661973 Pte8g00817 8 31648968 31661973 RCT