Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00811 ATGGTGCTTCTTCATCACAGTCCACACCGGCTACTTCTAAATACAGATTCAAATTCACAGGCGCCAGCAGATGGAAATATGCCAAGAGGATCACACATAAATGAGGCAAATTTCGACACCAACATGGTTATCATATTAGCAGCTTTGCTTTGTGCACTAATTTGTGCTCTAGGACTCAATTCAATTGTAAAGTGTGCTATGAGATGTTGCCGGAGATTTTCGTTTGAGACAGCAAATGAGACTGCAGCACGGTTAGCAGGAAAGGGACTCAAGAAGAGTACATTGCGTAAGATTCCTATTGCAGTTTATGGTTTAGGTACACACATTTCAGCTACAGATTGCCCTATTTGCCTTGGAGAATTTATTGATGGTGAGAAACTTAAAGTCTTGCCAAAATGTAACCATGGTTTCCATGTAATTTGCATAGATACATGGTTATCGTCACACTCGTCTTGTCCAACTTGCCGACAGTGTTTGCTTGAAACACCAACAAGTTCTATTGCATAG 507 0.4083 MVLLHHSPHRLLLNTDSNSQAPADGNMPRGSHINEANFDTNMVIILAALLCALICALGLNSIVKCAMRCCRRFSFETANETAARLAGKGLKKSTLRKIPIAVYGLGTHISATDCPICLGEFIDGEKLKVLPKCNHGFHVICIDTWLSSHSSCPTCRQCLLETPTSSIA* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00811 168 Pfam Ring finger domain 113 156 IPR001841 -
Pte8g00811 168 CDD RING-H2_EL5-like 113 156 - -
Pte8g00811 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 160 IPR013083 -
Pte8g00811 168 PANTHER RING-H2 FINGER PROTEIN ATL78 28 165 IPR044602 GO:0016567|GO:0016740
Pte8g00811 168 SUPERFAMILY RING/U-box 99 161 - -
Pte8g00811 168 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Pte8g00811 168 SMART ring_2 114 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00811 Pte-Chr8 31532459 31534244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00811 10 164 C3H Transcription Factor Family AT3G10910 58.182 1.91e-57 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00811 - K19040 qsa:O6P43_020103 265.003