Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00777 ATGGTGAAGAGGAAGACCCGTTTAGATGAATCTATGCATCCCCTTTCTTCTTTCCCATTTGAGGCATTGCTCCATGGCTCATGGAAAAGTGTAGAGCTTATAAGAATAACAAATGGGGTCATTACGATGCATTTACCTGATAATCGGCCTGTGATCATGGAGAAAGGACCCTTCCTAGACATGCGGTTGAAGTCCAGGACAGCTACTATGTCAGATTGCTCTTGCATTTTGAGACCTGGTGTCGATGTTTGTGTTCTGTCAACACCTCGAAGTACCGATGGTTCACATGAAAGTAATAATAAGGGCATATGGACTGATGCTAGAATAAAATCAATAGAGAGGAAGCCTCATGGGTCTGACTGCTTATGCCATTTTTATGTCAACTTTTATGTCAAACAAGGAGCCCTTGGTTCAGAAGTTAGAACTGTTAGTACAGATGTCACAGCAATCGGAATTAATCAAATCTGTGTTCTCCAGAAACTTGAAAGAAATCCTTGCGAAGATCAGCATTATCGGTGGGGTTCATCTGAGGATTGCTCTACATTGTCTCAAACTAAATTGCTATTGGGGCGATTTTTATGTGATCTTTCATGGTTAGCTGTTGCATCGGTTTTTAAGAAGGTGGCTTTTGATATAAGATCAATAGACAGCAAAATTGTATATCAAGTTCTGGTAGATAATGTGGACAGTTTGTCTTCCAACTCCTATAGGAATTTCAATTCTGTGAACTTCAAACAAAAGGATGGTATCCTAGTACCATTTGTATCTCAATTTTTCCCGAAGGCAATCACAAAAATTGACCATTCAAATGACTCAAATGTATCTGAAAGATCACAGTCTTCTAACTCTGTCTGCTTGAGACGCTCCAAACGTCGAAATTTACAACCGGAGAGATATTATGGATGTGATGAAATGACAGAGTTAGACATTGGTTTTGTTCGAACAAGGCCGTATAAGCTAGAGCAGTATGAAGATGATGAATTGTTCCTACCGCTGGCATACTTATTTGGAAAATCCACATATCACTCAGAAGAGAAAATGATTGGTAAACTACCTGTCAGTAATGTAAGTGACTTTGAGGAGGTTCATGCAAACAAAGATAAGCGGAAGTGCAAGCGGTCAAAATTGGGTACAACTAAGCCAAAAGAGCTTGAAAGTCAACTTGCCATTATCCCCATGATCGATGAATATGATTCACTAGCCCTTGATCTTTATCGGGGCAGAGAAAATATTCCAGAAAATTCTGTAAATGGATGTGATGACAGTTCTTCTAAGCACTGCTCTTATTTGAATATGACTCCTAATTCGCAGAAGAAAGACATTCATCTGTTAGGCTTTGGAGATTATCATCGCCATCCCAAGAATCCTGATCCTGAAAATCTTATGAATGAAGTTGCAGAATTTTATCCAAGACACAATCCTATTGGCAGTGCCATCAGAACGCAGAAGAAGAATTTCTTTGATCTTGAAGATAGGGAGTTGGGGAGTATCTGGGAAGGAAGCAATTCCAATAGAAGAACTCAACCCAAAACGTACCATCAAAGATGCTCAACGAGTCAAAGTTTTGGTAATGAAAGAACCTGTAAAGGTAGATCCTTGGATGCAGGCCCATACCGGGATTTAATCAATTCCCTATTGAAGAACATCAATAACTCAACGATAAAAGATCCTTCTCTTGCCGAGCAGTGGAAACAGTATAAAGAACAAACCAGTGCTGGGAAGAGGAAGGAGACGAAAATGTGTCTTGAAAAGAATGAGGAAGAGATCTCTGAAATTGACTTGCTATGGAGAGAAATGGAGCTTTGCTTGGCATCAAGTTATCTTACAGAAGATCATGATGGTCCAGATGCTGCAGAGTTCACAGACACAAGAAAAAGATCAAGTGAGCTTTGTGAGCATGATTACAGATTGGATGAACAAATTGGAATCTTGTGCATTAAGTGTGGATTTGTGAGCACTGAAATCAGAAACATTGCAACACCTGTTATGCAGCACACAATCTGGCACACTGAGAAACAGCAGCATGAGGAAGATTCAGAGAACAAGCCAGATGGAGAAGACTATGAATCTCGTGTCAAGAATAGTGTTTCTGCTGACTCATCTATGTCTGAAGGAAACGAGACTGTCTGGGCATTAATACCTGAACTGCGGGAAAAGTTGCATGTTCACCAAAAAAAAGCTTTTGAATTTCTGTGGAAAAATATTGCAGGATCTATAGAGCCTGCACAAATTAAAGAAACGTCGAAGAAGACAGGGGGTTGCGTAATATCCCATTCTCCTGGAGCTGGAAAGACTTTCCTCATCATAGCATTTCTAGTCAGCTACTTGAAATTATTTCCAGGAAAAAGGCCTCTGATTCTCGCTCCAAAATCGACACTCTATACATGGTGGAAAGAGTTTATAAAATGGGAAATTCCTATACCAGTTTATCTTCTTCATGGTCGGCAAACGTATAGAGCATTCAAGCAGGATTCTATAGTTCTTCCAGGAGCTGGAAAGCCTGGTAATGATGTCAAGCATGTAGTTGATTGCCTGCAAAAAATACGGAAATGGCATGCTCAACCTAGCATTCTAGTCATGGGGTACACTTCATTTTTAACTTTAATGAGAGAAGATGCGAAGTATGCATATCGGAAGTACATGGCTAAAGTCTTGCGTGAAAGTCCTGGAATCTTAATATTGGATGAAGGGCACAACCCCCGAAGTAACAAATCAAGATTGAGGAAGGCTCTGATGAAAGTCGAGACGGAAATGAGAGTGTTACTTTCAGGTACATTGTTTCAGAATAATTTCTGTGAATACTTCAACACTCTGTGCTTGGCAAGACCTAAATTTGCCCATGAAGTGTTGAAAGAACTAGATCCTAAGTACAAAAAGAACAAAAAAAATGCAGCAAAAATCAGGTTCATGGAATCGCGGGCCAGAAAGCATTTCTTAGATACCATTGCTAAGAAAATTGATTCAAATGTTAATGAGGAGAGGATGCAGGGTCTAAATATGTTGAGAAATATGACAAGTGGATTTATTGATGTTTACGACGGTACGAATTCTGATGTCCTCCCTGGTTTACAGATATACACCTTGTTGATGAATTCAACTGATATACAACATGTAATATTGAATAAACTCCACAATATCATGTATAAATACACTGGATATCCTCTTGAGTTGGAACTTATGATAACTCTTGGGTCTATACATCCTTGGTTAGTGAAAACTGCTGTATGTGCTGATAAATTCCTAGACAAGCAGGAGTTAATGTTGTTAGAGAAGTACAAGTACGACCTCAAGAAAGGGGCAAAAATTAGATTTGTTTTGAGCCTTGTATATCGTGTTGTTCGGAATGAGAAGGTCCTTATTTTCTGCCACAATATCGCTCCTGTTCGATTATTTGTGGAACTGTTTGAGAGGTTCTTTGGTTGGCAAAAAGGCAAAGAAGTTTTGGTTATTACAGGAGAACTAGAGCTGTTTGAAAGAGGGAAAGTGATAGACAAGTTTGAGGAACCAGGAGGGTCATCAAGGGTCCTCCTTGCTTCAATATCATCTTGTGCTGAAGGCATTAGCTTGACAGCAGCATCTCGGGTGATTTTACTAGACTCAGAGTGGAATCCTTCCAAGACAAAGCAGGCAATTGCTCGAGCTTTTCGCCCTGGTCAGCAAAAGATGGTTTACGTGTATCAACTACTGTCTACAGGCACACTGGAAGAAGATAAGTACCGGAGGACCACTTGGAAAGAGTGGGTTTCAAGCATGATTTTCAGTGAGGCTTTTGTTGAGGATCCTTCTCAATGGCAAGCAGAAAAGATTGAAGATGACATATTGCGGGAGATGGTTGAGGAGGATAGGTCGAAAACGTTCCATATGATAATGAAGAATGAAAAAGCTTCAACAAACTAA 3897 0.3985 MVKRKTRLDESMHPLSSFPFEALLHGSWKSVELIRITNGVITMHLPDNRPVIMEKGPFLDMRLKSRTATMSDCSCILRPGVDVCVLSTPRSTDGSHESNNKGIWTDARIKSIERKPHGSDCLCHFYVNFYVKQGALGSEVRTVSTDVTAIGINQICVLQKLERNPCEDQHYRWGSSEDCSTLSQTKLLLGRFLCDLSWLAVASVFKKVAFDIRSIDSKIVYQVLVDNVDSLSSNSYRNFNSVNFKQKDGILVPFVSQFFPKAITKIDHSNDSNVSERSQSSNSVCLRRSKRRNLQPERYYGCDEMTELDIGFVRTRPYKLEQYEDDELFLPLAYLFGKSTYHSEEKMIGKLPVSNVSDFEEVHANKDKRKCKRSKLGTTKPKELESQLAIIPMIDEYDSLALDLYRGRENIPENSVNGCDDSSSKHCSYLNMTPNSQKKDIHLLGFGDYHRHPKNPDPENLMNEVAEFYPRHNPIGSAIRTQKKNFFDLEDRELGSIWEGSNSNRRTQPKTYHQRCSTSQSFGNERTCKGRSLDAGPYRDLINSLLKNINNSTIKDPSLAEQWKQYKEQTSAGKRKETKMCLEKNEEEISEIDLLWREMELCLASSYLTEDHDGPDAAEFTDTRKRSSELCEHDYRLDEQIGILCIKCGFVSTEIRNIATPVMQHTIWHTEKQQHEEDSENKPDGEDYESRVKNSVSADSSMSEGNETVWALIPELREKLHVHQKKAFEFLWKNIAGSIEPAQIKETSKKTGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLILAPKSTLYTWWKEFIKWEIPIPVYLLHGRQTYRAFKQDSIVLPGAGKPGNDVKHVVDCLQKIRKWHAQPSILVMGYTSFLTLMREDAKYAYRKYMAKVLRESPGILILDEGHNPRSNKSRLRKALMKVETEMRVLLSGTLFQNNFCEYFNTLCLARPKFAHEVLKELDPKYKKNKKNAAKIRFMESRARKHFLDTIAKKIDSNVNEERMQGLNMLRNMTSGFIDVYDGTNSDVLPGLQIYTLLMNSTDIQHVILNKLHNIMYKYTGYPLELELMITLGSIHPWLVKTAVCADKFLDKQELMLLEKYKYDLKKGAKIRFVLSLVYRVVRNEKVLIFCHNIAPVRLFVELFERFFGWQKGKEVLVITGELELFERGKVIDKFEEPGGSSRVLLASISSCAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLSTGTLEEDKYRRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDILREMVEEDRSKTFHMIMKNEKASTN* 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00777 1298 MobiDBLite consensus disorder prediction 671 701 - -
Pte8g00777 1298 Pfam SNF2-related domain 716 970 IPR000330 GO:0005524|GO:0140658
Pte8g00777 1298 SMART helicmild6 1129 1218 IPR001650 -
Pte8g00777 1298 SMART ultradead3 716 953 IPR014001 -
Pte8g00777 1298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 709 957 IPR027417 -
Pte8g00777 1298 CDD SF2_C_SNF 1088 1229 - -
Pte8g00777 1298 Gene3D - 1073 1292 IPR027417 -
Pte8g00777 1298 Gene3D - 688 987 IPR038718 -
Pte8g00777 1298 MobiDBLite consensus disorder prediction 671 693 - -
Pte8g00777 1298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1020 1284 IPR027417 -
Pte8g00777 1298 Pfam Helicase conserved C-terminal domain 1101 1217 IPR001650 -
Pte8g00777 1298 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 745 944 IPR014001 -
Pte8g00777 1298 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 53 1297 IPR044567 GO:0080188
Pte8g00777 1298 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1104 1265 IPR001650 -
Pte8g00777 1298 CDD DEXHc_ATRX-like 720 945 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00777 Pte-Chr8 31088742 31095066 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00777 1097 1236 RAD5 or RAD16-like Gene Family AT5G43530 32.168 6.75e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte8g00777 SNF2_N 3.7e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00777 K10875 - qsa:O6P43_013801 1608.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte8g00777 8 31088742 31095066 Pte8g00777 8 31088742 31095066 RCT