Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00772 ATGGGTGGAAATTCTCCTTGTGCCTCATGCAAGTTGTTGAGACGCAGATGTGGCAAGCACTGCATCTTTGCTCCTTACTTTCCATCTGATGATCCCTACAAGTTTGCCATGGTTCACAAGGTTTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAACTTCCAGTGCACCAAAGAGCAGATGCTGTGAGCAGTCTAGTGTATGAAGCAAATGCAAGAGTTAGAGACCCAGTTTATGGATGTGTTGGATCTATTTCTTACTTGCACAACCGGGTCTCTGAGCTTCAAATGCAACTTGCAGTGGCTCAAGCAGAAATACTTTGTATCCAGATGCAACATGAGCCTGTGATTCCAGCCCTAAAAATTGATCAGCCAGATGATAAATCATATTTTCTACCTAACAACTTTCCTCAGTACTTAAACTTTGCTTCCACCAGTGATGTGATCCATGATTCTCTCAAGAGAGAGGCTATTTTTGGTCATGACATGGTTTCTTGTATGTTTTCATGA 510 0.4235 MGGNSPCASCKLLRRRCGKHCIFAPYFPSDDPYKFAMVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGSISYLHNRVSELQMQLAVAQAEILCIQMQHEPVIPALKIDQPDDKSYFLPNNFPQYLNFASTSDVIHDSLKREAIFGHDMVSCMFS* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00772 169 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Pte8g00772 169 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Pte8g00772 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00772 Pte-Chr8 31052000 31052730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00772 3 132 AS2 family AT2G30130 79.104 5.54e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte8g00772 LOB 1.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00772 - - cave:132186671 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00920 16 28545535 28547884 Pte8g00772 8 31052000 31052730 RCT
Pte8g00772 8 31052000 31052730 Pte8g00772 8 31052000 31052730 RCT