Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00747 ATGTGCAGTGGTTCAAAGAGTATAGACATCCCCTCAAATCAAACCATGGAAAGCAAGTCACAGGAGCAGGTTGGAGATCGTTTCTACAAATTCTGGGTTTTACTCGAGTTGTCTGCATCTGATGATCTCGGAGCCTTTAGACGCGAAGTTGAAGACAAGGGTGTGAACGTTGATGAGTCAAGCTTTTGGTATGGAAGGAGAATTGGCTCAAAAAAGATGGGATATGAGGAGAGGACGCCACTGATGATTGCTTCCATGTACGGAAGCACAAAGGTGTTGAAGTATCTGCTCGAGGAAGGCAAGGCTGATGTCAACAGGGTATGTGGCTCTGAAAAGGCCACTGCTCTCCACTGTGCTGTTGTTGGTGGCTCTGAATCTTCCCTTGAGATTGTTAAGCTACTGCTTGATGCTCAGGCAGATGCCGATTGTGTTGATGCTAATGGTAACAAGCCTATCAGCTTGATAACTCCTGCTTTTAATCATGTAGCTAAGTTGCGGAGAAAGGCCATGGAATTGTTGCTGACAGGTGGTAAAGTAGCTGAAGAAGGTGATGAATCGATTTATTATGGGGAGTTCCAGAAGAAGATGACAACTTCTCTATCATCTTCTAAAGAGGGAGCTGAAAAGAAAGAATATCCTATTGATATATCACTTCCTGATATTAACGATGGCATATATGGCAGTGACGAATTTAGGATGTACTCCTTCAAGGTTAAGCCTTGCTCCAGGGCTTATTCTCATGACTGGACCGAGTGCCCATTTGCTCATCCAGGAGAGAATGCTAGGAGGAGAGACCCAAGGAAGTATCCATATAGTTGTGTTCCTTGTCCAGAGTTTCGTAAAGGCGCATGCCAGAAGGGTGATTCTTGTGATTATGCTCATGGTGTTTTTGAGTCTTGGCTACATCCTGCTCAGTATAGAACCCGGCTTTGCAAGGATGAAACTGGATGCAGCAGGAAGGTCTGCTTCTTTGCTCACAAAACTGAAGAATTACGCCCTGTGTATGCCTCCACTGGCTCAGCTATGCCATCACCGAAGTCTATGCCAAGCAGTGCGATTGATATGTCAGTTATGAGTCCATTGACTCTTAATTCATCATCTTTGCCGATGCCAACTGCTTCAACTCCACCTATGTCTCCTTTGGCAGCTTCTTCCACACCTAAAGCTGGAAACTTATGGCAGAACAAGGTCAACCTTACTCCACCTTCCTTGCAGCTCCCAGGTAGCCGACTGAAGACGTCTCTAAGTGCTAGGGATTTTGATATGGGCATGGATATCCTTGGACTGGGAAGCCATGGTAGCCAACAGAATCAGCTTTTGATGGAAGAGATATCTCGACTCTCCTCTCCCTCTATACGGAATAGCAGCAGAATGTGTGATTTGCAGGCTACAAATCTTGATGAGCTTTTGGGCTCTGTAGATCCTTCAGTTTTATCTCAATTGCAGGGGCTCTCTGGAAGTCCTTCAACTCCTACCAGATTGCAGTCACCAACCGGTATTCAGATGCACCAAAACTTGAATCAGCGTGCAAATTATTCCACCAACCTACCTTCTTCACCACTGAGGAAGCCCTCTGTGTATGGATTTGATTCATCTGCTGCCGTGGCTGCAGCTATGATGAATGCTAGATCTTCTGCATTTGCTAAGCGCAGCCAGAGTTTTGTCGACCGTGGAGCAGTTCCCTACAATTCTGGGATGTCTGTGAATCCAAATTCATCACCTTGGAAGTCTTCCAATCTTTCAGATTGGAGCTCCCCAGATGGCAAACTAGATTGGGGTTTGCATGGAGATGAGCTGAACAAGCTAAAGAAATCTGCTTCTTTTGCATTCAGAAGCAACAATTCAATGCCTAACACCAACCAGACCCTGACATCTTCGATTTCCGAGGAACCAGATGTGTCTTGGGTTCATTCCTTGGTCAAAGATGTCCCCTTTGAGGGTTCCAGAATGTTCAGTTCTGAGAAGCAGCAATGTGACTTGAGCAAAGATATGCTTCCACCATGGGTTGAACAGATGTATATAGAACAGGAGCAACTGGTGGCATAA 2046 0.4555 MCSGSKSIDIPSNQTMESKSQEQVGDRFYKFWVLLELSASDDLGAFRREVEDKGVNVDESSFWYGRRIGSKKMGYEERTPLMIASMYGSTKVLKYLLEEGKADVNRVCGSEKATALHCAVVGGSESSLEIVKLLLDAQADADCVDANGNKPISLITPAFNHVAKLRRKAMELLLTGGKVAEEGDESIYYGEFQKKMTTSLSSSKEGAEKKEYPIDISLPDINDGIYGSDEFRMYSFKVKPCSRAYSHDWTECPFAHPGENARRRDPRKYPYSCVPCPEFRKGACQKGDSCDYAHGVFESWLHPAQYRTRLCKDETGCSRKVCFFAHKTEELRPVYASTGSAMPSPKSMPSSAIDMSVMSPLTLNSSSLPMPTASTPPMSPLAASSTPKAGNLWQNKVNLTPPSLQLPGSRLKTSLSARDFDMGMDILGLGSHGSQQNQLLMEEISRLSSPSIRNSSRMCDLQATNLDELLGSVDPSVLSQLQGLSGSPSTPTRLQSPTGIQMHQNLNQRANYSTNLPSSPLRKPSVYGFDSSAAVAAAMMNARSSAFAKRSQSFVDRGAVPYNSGMSVNPNSSPWKSSNLSDWSSPDGKLDWGLHGDELNKLKKSASFAFRSNNSMPNTNQTLTSSISEEPDVSWVHSLVKDVPFEGSRMFSSEKQQCDLSKDMLPPWVEQMYIEQEQLVA* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00747 681 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Pte8g00747 681 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Pte8g00747 681 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Pte8g00747 681 PANTHER UNKEMPT FAMILY MEMBER 36 643 IPR045234 -
Pte8g00747 681 SUPERFAMILY Ankyrin repeat 50 154 IPR036770 -
Pte8g00747 681 ProSiteProfiles Ankyrin repeat profile. 76 100 IPR002110 GO:0005515
Pte8g00747 681 SMART ANK_2a 76 106 IPR002110 GO:0005515
Pte8g00747 681 SMART ANK_2a 111 143 IPR002110 GO:0005515
Pte8g00747 681 MobiDBLite consensus disorder prediction 1 21 - -
Pte8g00747 681 ProSiteProfiles Ankyrin repeat region circular profile. 76 100 - -
Pte8g00747 681 Gene3D - 34 173 IPR036770 -
Pte8g00747 681 Gene3D - 271 333 - -
Pte8g00747 681 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Pte8g00747 681 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872
Pte8g00747 681 Pfam Ankyrin repeats (3 copies) 74 142 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00747 Pte-Chr8 30797040 30800117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00747 1 676 C2H2 Transcription Factor Family AT5G12850 37.881 1.29e-143 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte8g00747 Ank_2 1.2e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00747 - - qsa:O6P43_013842 909.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte8g00747 8 30797040 30800117 Pte8g00747 8 30797040 30800117 RCT