Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00709 ATGGCTTCTTCAAGTGTCAATCATATTTCTCAACCATGTATTCATGGGGACTTTCTTTCTTCACACGCAGAGCGAAAGTCTTGGTTTGTGAAATGGCTAAGTAAGCTTTTCAAGGGTGGTCCCAATCGAGGTGGCGGAGGTCGTAATGTACAGCTTCATGGGGAGGAAAACATGGTATGGAGTGCACCAGCAAGATCATTGGATGATCCTAGTCGAGCACAAAAGGAGAAAGAGGAGTTGGATCCAGCAATGGCGCCTTCCTTGGCCGAAGATTCAAAGAGACGAAATACCAGAGGGTATAAATGGAGGACAGAAAATGATGAAGAACTTGCAAAGGCACTTCAAGATTGTCCATATAGTCCTGCATATCCGCCTTATGCTCCTACACAATGTTATCCCAGGGGATATAAAGTATGTGGCGGATGTCACCAGGAGATAGTCTATGGCAATTATCTGGGATGCCTAGATACCTTCTATCATCCAGACTGCTTCCTTTGCCGTTCTTGTGGTTATCCCATCACTGAGCGTGAGTTTTCTTTGTCAGGAAGAGATCCATATCACAAATCTTGCTTCAAAGAGATGACACACCCCAAATGTGAAGTTTGTCTTCAATTTATTCCCACAAATGCTGCTGGTTTGATAGAGTATAGATGCCACCCATTTTGGTCACAGAAGTATTGTCCATGCCACGAACATGATAATACAGCTCGCTGCTGTAGTTGTGAAAGGTTGGAGTCTTGGAATGCAAGATACTATACTTTGGAAGATGGACGAAGTCTATGCATGGAGTGCATGGAATCCGCTATAACAGATACTGGTGATTGCCAGCCTCTTTACCATGCCATTAGAGATTATTATGAAGGAATGAACATGAAGCTAGACCAGCAAATTCCCATGCTACTGGTTGAGAGACAAGCACTCAATGAAGCTATCAATGGGGAGAAGATTGGTTTCCATCATTTGCCTGAGACTAGAGGGTTATGCCTTTCTGAAGAGCAAACTGTTACCAGCATTCTGAGGCCGAAATTTGGAGCTCACAGATTTGTAGGAGTCAGAACTCAACGTCAAAAGCTCTCTCGGAAATGTGAAGTTACAGCAATTCTTGTGCTTTATGGCCTTCCAAGATTGCTCACAGGTGCAATCCTTGCACACGAGTTGATGCATGGCTGGTTACGCCTTAAAGGTTACTGCAATCTTAACCCTGAGGTGGAGGAAGGTATCTGTCAGGTGCTATCTTACATTTGGCTTGAGTCAGAAGTAATGCCAGGTTGTGCAAACACACCATCTACGTCAGCAGCTCCCTCGTCATCATTATCATCTTCCAAGAAACGTGCAAAATCTGACACTGAAAATAAGCTGGGGAAATTTTTCATGCATCAAATAGCATATGATGCTTCCCCAGCATATGGCGGTGGTTTTAGAGCTGCTATTGCAGCTGTGAACAAGTACGGCCTACGCCGCACTCTCGATCACATTCGTCTCACCGGCAATTTTCCATTGTAA 1503 0.4431 MASSSVNHISQPCIHGDFLSSHAERKSWFVKWLSKLFKGGPNRGGGGRNVQLHGEENMVWSAPARSLDDPSRAQKEKEELDPAMAPSLAEDSKRRNTRGYKWRTENDEELAKALQDCPYSPAYPPYAPTQCYPRGYKVCGGCHQEIVYGNYLGCLDTFYHPDCFLCRSCGYPITEREFSLSGRDPYHKSCFKEMTHPKCEVCLQFIPTNAAGLIEYRCHPFWSQKYCPCHEHDNTARCCSCERLESWNARYYTLEDGRSLCMECMESAITDTGDCQPLYHAIRDYYEGMNMKLDQQIPMLLVERQALNEAINGEKIGFHHLPETRGLCLSEEQTVTSILRPKFGAHRFVGVRTQRQKLSRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYCNLNPEVEEGICQVLSYIWLESEVMPGCANTPSTSAAPSSSLSSSKKRAKSDTENKLGKFFMHQIAYDASPAYGGGFRAAIAAVNKYGLRRTLDHIRLTGNFPL* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00709 500 ProSitePatterns LIM zinc-binding domain signature. 139 173 IPR001781 -
Pte8g00709 500 MobiDBLite consensus disorder prediction 61 102 - -
Pte8g00709 500 Pfam LIM domain 139 193 IPR001781 -
Pte8g00709 500 SMART lim_4 138 190 IPR001781 -
Pte8g00709 500 Pfam Protein DA1 288 495 IPR022087 -
Pte8g00709 500 MobiDBLite consensus disorder prediction 69 84 - -
Pte8g00709 500 FunFam Protein DA1-related 2 127 192 - -
Pte8g00709 500 PANTHER PROTEIN DA1-RELATED 2 32 499 IPR045218 -
Pte8g00709 500 CDD LIM_DA1 139 191 - -
Pte8g00709 500 MobiDBLite consensus disorder prediction 426 442 - -
Pte8g00709 500 MobiDBLite consensus disorder prediction 426 445 - -
Pte8g00709 500 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 164 - -
Pte8g00709 500 ProSiteProfiles LIM domain profile. 137 197 IPR001781 -
Pte8g00709 500 Gene3D Cysteine Rich Protein 133 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00709 Pte-Chr8 30408998 30414470 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte8g00709 DA1-like 1.1e-92 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00709 - - qsa:O6P43_014377 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte8g00709 8 30408998 30414470 Pte8g00709 8 30408998 30414470 RCT