Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00679 ATGGACTCTACCCCTCTCTCCCGTTCTTCTTCATCTTCTTATTCTTCGTGTTCTTCCTTTTCTTCTTCGTCTTTACCCGACGTTCATGGTCCACCACACTCGATTTCCGAGGTTGATAATATGACCAAATCGCCTTTAGCGGTTCGTGTGGCCCTCCAACTACTCCAATCGGACGACCCGGATTCCAGGCTGCACGCCGCTAGAGAAATCAGAAGGCTCACTAAGACATCGCAACGCTGTCGCCGACAGCTCTCGCAAGCTATTGTATCGCTTGTATCCATGCTCCGAGGCGACTCATCCGAGTTTCACGAGGCTGCTCTCCTTGCTCTCCTTAATCTTGCTGTCAAAGATGAAAAGAACAAAATCAGAATAGTGGAAGCTGGTGCTTTAGTTCCAATTATTGGTTTCCTCAGGTCACAAAATCCAAATCTGCAAGAGTATGCAACAGCATCTCTGCTCACTCTGTCTGCTTCTGCAACCAACAAGCCTATAATAAGTGCTTCGGGTGCCATTCCTCTTCTTGCTGAAATCCTCAGAGATGGAATCCCACAAGCCAAAGCTGACGCAGTAATGGCTCTTTCAAACTTGTCAACTCATCCAAACAATCTGAGCATCATTCTTGAGACCAAACCAATCCCTTCAATAGTAAGTTTACTGAAAACATGTAAAAAATCGTCAAAGACAGCTGAGAAGTGCAGTTCATTGATCGAATCCTTGGTGGGTTTTGATGAGGGCAGAACTATCTTGACATCTGAAGAAGGTGGGGTGCTTGCTGTCGTCGAAGTCATTGAAAATGGATCTCTCCAAAGTCGGGAGCATGCCGTTGGAGCACTGTTAACAATGTGCCAAAGTGAGCGACGTAAATACAGGGAGCCAATCCTTAGAGAAGGGGTTATTCCTGGACTTCTTGAACTCACAGTTCAAGGCACACCCAAGTCTCAGTCAAAAGCACATGCTCTCTTGCAGCTACTCAGGGAATCTCCATATGCAAGATCTGAAATTGAACCAGACACATTGGAAAACATAGTATGCAATATTATATCACAGATTGATGGAGAAGACCAGTCTGGTAAAGCCAAGAAGATGCTGGCAGAGATGGTCCAAGTTAGCATGGAGCAGAGCTTGAGACATTTGCAGCAACGTGCTCTTGTATGTACACCGACTGATCTACCAATCACCAGCTGTACTTCTGAAGTTTCCTCTAAATAA 1209 0.4557 MDSTPLSRSSSSSYSSCSSFSSSSLPDVHGPPHSISEVDNMTKSPLAVRVALQLLQSDDPDSRLHAAREIRRLTKTSQRCRRQLSQAIVSLVSMLRGDSSEFHEAALLALLNLAVKDEKNKIRIVEAGALVPIIGFLRSQNPNLQEYATASLLTLSASATNKPIISASGAIPLLAEILRDGIPQAKADAVMALSNLSTHPNNLSIILETKPIPSIVSLLKTCKKSSKTAEKCSSLIESLVGFDEGRTILTSEEGGVLAVVEVIENGSLQSREHAVGALLTMCQSERRKYREPILREGVIPGLLELTVQGTPKSQSKAHALLQLLRESPYARSEIEPDTLENIVCNIISQIDGEDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPTDLPITSCTSEVSSK* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00679 402 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 169 209 IPR000225 GO:0005515
Pte8g00679 402 SMART arm_5 76 115 IPR000225 GO:0005515
Pte8g00679 402 SMART arm_5 242 283 IPR000225 GO:0005515
Pte8g00679 402 SMART arm_5 158 198 IPR000225 GO:0005515
Pte8g00679 402 SMART arm_5 117 157 IPR000225 GO:0005515
Pte8g00679 402 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 86 128 IPR000225 GO:0005515
Pte8g00679 402 SUPERFAMILY ARM repeat 47 352 IPR016024 -
Pte8g00679 402 FunFam U-box domain-containing protein 4 33 384 - -
Pte8g00679 402 MobiDBLite consensus disorder prediction 1 29 - -
Pte8g00679 402 PANTHER U BOX DOMAIN-CONTAINING 39 328 - -
Pte8g00679 402 MobiDBLite consensus disorder prediction 1 39 - -
Pte8g00679 402 Gene3D - 199 377 IPR011989 -
Pte8g00679 402 Gene3D - 39 198 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00679 Pte-Chr8 29813935 29817357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00679 48 325 U-box Gene Family AT2G23140 35.000 4.22e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00679 - - qsa:O6P43_020601 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte8g00679 8 29813935 29817357 Pte8g00679 8 29813935 29817357 RCT