Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00660 ATGGAATCTGTGCTGTGCTTTCGCCAGTCTATACGCAGAACACGGACATTTCCGTGGCAGCATGACTTGTTTGAAGATAGCATTAGAGCTGCAGGGATTCAGGGGATTGAAGTTGGAACCAAGTTATATGTCTCCAACCTAGAGCAAGGAGTCACCAATGATGATATAAGGGAACTTTTCTCGGAGATTGGAGACATGAAGCGTTATGCAATCCATTATGATAGAAATGGCCGCCCAAGTGGTTCTGCTGAAGTTGTCTATACGAGAAGAAGTGATGCTTTTGCAGCTCTGAAAAGATACAACAATGTGCTTTTGGATGGGAAGCCAATGAAGATTGAAGTTGTAGGTGCCAAGGCAGAATTGCCTGTTACGGCTCGTGTGAATGTAACAGGTTTCCATGGACAGCGGAAAAGGACAGTTGTCATGTCGTCAGGAGGAGGTCGCACTGGTGGCACTGCACTAAATACCGGTGCTGCTGTTAGACGCCGTCGTGGAGGTGCAAGGGGAGGTGGTGGTGGTCGAGGACGTGGCCGTGCCACTGCTAATGGCGCAGGTCGGGGTCGGGGTCGTGGTCGTGGAAAGAAGGGGGTGAAGTCAGCAGAGGAGCTTGACAAAGAATTGGATACTTACCATGCAGAAGCGATGAATATCTCGTGA 657 0.4947 MESVLCFRQSIRRTRTFPWQHDLFEDSIRAAGIQGIEVGTKLYVSNLEQGVTNDDIRELFSEIGDMKRYAIHYDRNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEVVGAKAELPVTARVNVTGFHGQRKRTVVMSSGGGRTGGTALNTGAAVRRRRGGARGGGGGRGRGRATANGAGRGRGRGRGKKGVKSAEELDKELDTYHAEAMNIS* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00660 218 CDD RRM_THOC4 40 113 - -
Pte8g00660 218 SMART FoP_duplication_2 146 218 IPR025715 -
Pte8g00660 218 MobiDBLite consensus disorder prediction 161 205 - -
Pte8g00660 218 SUPERFAMILY RNA-binding domain, RBD 39 136 IPR035979 GO:0003676
Pte8g00660 218 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 117 IPR000504 GO:0003723
Pte8g00660 218 SMART rrm1_1 41 113 IPR000504 GO:0003723
Pte8g00660 218 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 110 IPR000504 GO:0003723
Pte8g00660 218 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 12 215 - -
Pte8g00660 218 Pfam C-terminal duplication domain of Friend of PRMT1 157 212 IPR025715 -
Pte8g00660 218 Coils Coil 200 218 - -
Pte8g00660 218 Gene3D - 36 117 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00660 Pte-Chr8 29563482 29565552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00660 39 120 Eukaryotic Initiation Factors Gene Family AT2G23350 34.146 1.05e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00660 K12881 - gmx:100820344 273.863