Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00646 ATGGAATCTGTGCTGTGCTTTCGCCAGTCTATACGCAGAACACGGACATTTCCGTGGCAGCATGACTTGTTTGAAGATAGCATTAGAGCTGCAGGGATTCAGGGGATTGAAGTTGGAACCAAGTTATATGTCTCCAACCTAGAGCAAGGAGTCACCAATGATGATATAAGGGAACTTTTCTCGGAGATTGGAGACATGAAGCGTTATGCAATCCATTATGATAGAAATGGCCGCCCAAGTGGTTATGCTGAAGTTGTCTATACGAGAAGAAGTGATGCTTTTGCAGCTCTGAAAAGATACAACAATGTGCTTTTGGATGGGAAGCCAATGAAGATTGAAGTTGTAGGTGCCAAGGCAGAATTGCCTGTTACGGCTCGTGTGAATGTAACAGGTTTCCATGGACAGCGGAAAAGGACAGTTGTCATGTCGTCAGGAGGAGGTCGCACTGGTGGCACTGCACTAAATACCGGTGCTGCTGTTCGTAAGTGTGTTGCTGTCAATAATCTGCGACCTGTGAATGTGTGGACTTACTCAGCTATGGAGAGAGGGCATCTTTATCAACCTGCTGACTGCACTTGGTGGATATGCTTCAATAAGCAGATAACTGAAATCAATATTGAGCGGTGCTGTTGTGTTGCAAACTTAAATTAG 651 0.4501 MESVLCFRQSIRRTRTFPWQHDLFEDSIRAAGIQGIEVGTKLYVSNLEQGVTNDDIRELFSEIGDMKRYAIHYDRNGRPSGYAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEVVGAKAELPVTARVNVTGFHGQRKRTVVMSSGGGRTGGTALNTGAAVRKCVAVNNLRPVNVWTYSAMERGHLYQPADCTWWICFNKQITEINIERCCCVANLN* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00646 216 Gene3D - 36 117 IPR012677 -
Pte8g00646 216 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 12 157 - -
Pte8g00646 216 CDD RRM_THOC4 40 113 - -
Pte8g00646 216 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 117 IPR000504 GO:0003723
Pte8g00646 216 SMART rrm1_1 41 113 IPR000504 GO:0003723
Pte8g00646 216 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 110 IPR000504 GO:0003723
Pte8g00646 216 SUPERFAMILY RNA-binding domain, RBD 39 136 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00646 Pte-Chr8 29213280 29216933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00646 39 120 Eukaryotic Initiation Factors Gene Family AT2G23350 32.927 5.82e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00646 K12881 - jre:108988140 246.899