Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00638 ATGGGGAGGCAACCGTGCTGTGATAAAGTTGGATTGAAGAAAGGTCCGTGGACGGCAGAAGAGGATAAGAAGCTAATCAACTTCATCCTCAACAATGGCCAATGCTGCTGGAGAGCTGTTCCTAAGCTTGCAGGACTTTTAAGGTGTGGGAAGAGTTGCAGGCTTAGATGGACAAACTATCTGAGGCCAGACTTGAAGAGAGGCCTTCTCTCAGAGTATGAAGAGAAAATGGTGATTGATCTCCATGCTCAACTTGGCAACAGATGGTCCAAGATTGCTTCTCATCTCCCTGGAAGAACTGACAATGAAATTAAGAATCATTGGAATACACACATAAAGAAGAAACTCAAAAAGATGGGGATTGACCCTCTAACTCACAAGCCTATCTCTAATTCACCGGATCAACGTGGCCAGAACCCTCAATCAGAAAAAGAGAAGCAGCAGCCATCTTCATCACTTTCTAACCCCACCATTGAAATTACTCAGAATAACGAGACTGAGACATCGTGCAAGTCTTCAACCATAACTGATCAAGCTAAAGAAGGAGAGAGAAGCAACAAGGAAAACTCCTTTGAAACGATGGAACTGATCAATGGTTTCTGCTTAGATGAAATTCCAATCCTAGAACCCCTTGAAATTTTGGTTCCTTCTTCATCAACATGTTCATCAACATCATCATCATCTTCTTCTTCTTCCAACTCATGCAACTTCCTGGATGACTTGCAACTCCCAGATTTTGAGTGGTCATATAATTGCGTAGACATTGACAACAACAGTAGTACAAACAAGAACATGAGTTTGTGGGATGATGACTTTAGTAGTTTGCTAATTAATGAATATGATGGCGACAGACAGCCAATGCTTGATCCTCCTACCTACCAGTACTCAAGAATGGTGATGGATCAAGAATCTTGGGCATATGGACTGTTTGGATAG 936 0.4209 MGRQPCCDKVGLKKGPWTAEEDKKLINFILNNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPLTHKPISNSPDQRGQNPQSEKEKQQPSSSLSNPTIEITQNNETETSCKSSTITDQAKEGERSNKENSFETMELINGFCLDEIPILEPLEILVPSSSTCSSTSSSSSSSSNSCNFLDDLQLPDFEWSYNCVDIDNNSSTNKNMSLWDDDFSSLLINEYDGDRQPMLDPPTYQYSRMVMDQESWAYGLFG* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00638 311 Gene3D - 70 153 - -
Pte8g00638 311 CDD SANT 16 61 IPR001005 -
Pte8g00638 311 FunFam MYB transcription factor 11 67 - -
Pte8g00638 311 MobiDBLite consensus disorder prediction 120 190 - -
Pte8g00638 311 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte8g00638 311 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 221 - -
Pte8g00638 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte8g00638 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte8g00638 311 SMART sant 66 114 IPR001005 -
Pte8g00638 311 SMART sant 13 63 IPR001005 -
Pte8g00638 311 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte8g00638 311 MobiDBLite consensus disorder prediction 128 176 - -
Pte8g00638 311 CDD SANT 74 112 IPR001005 -
Pte8g00638 311 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte8g00638 311 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte8g00638 311 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Pte8g00638 311 FunFam MYB-related transcription factor 70 130 - -
Pte8g00638 311 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00638 Pte-Chr8 29058872 29061296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00638 1 275 MYB Transcription Factor Family AT1G66230 61.837 2.14e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte8g00638 Myb_DNA-binding 6.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00638 K09422 - gmx:100803624 401.749