Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00617 ATGAGATCAATTTTTGACCTTGAAGTGGAGGCTTCAGTAAAAAATGAATCTGAAGTTAGTAGCCAAGCTGAGTCTAACATATCAGCTCCAGATACCTGTGCAGTTCCCTCATGTGAAAGCCTTGCTAATTCTTCCCCCATCACAAATCCAGTAGGTGCTCAACCAAATCCAAAACCAGTTACACTTGATTTAACTCTCAACAACGATGGTAACGAATCAATAGGCCTCACATTGTCAAGTACTAGTGAGAGCAGCAATGAACCAGCCGTTCATACTACTGCATCAACCATTCCTCGAGTTTTCTCATGCAATTACTGTCAGCGCAAATTTTACAGCTCGCAGGCACTTGGTGGTCACCAGAATGCGCACAAGAGAGAGAGAATGTTGGCGAAACGAGCTATGCGAATGGGGTTATTTTCTGATAGGTATGCGAGTCTAGCGTCTCTACCTCTGCACGGGTCTTTCAGATCATTAGGCATAAAAGCACACTCTTCACTGCACCATGGCTTTTCAACATCAATAAGGCCTCCTGAGATTAAAGGAAATGCTAGATTTGAGCAAGGTTATCTCGGTGCATCTGCACCCGTGTTCCTGGATAACGTTGAAGGTGATCAGTTTATGTGGCCAGGGAGTTTTCGTCATGCTGCAGAGGCTGGTCCGAGTCATCATCCTCATACAAGTTTTCCACTGACTGGAAGAAATTTAAGTTTTACAGATGTGACAACTACCACAGACATAGACAACTCTATGCCGGATCTTACATTGAAGCTGTAG 774 0.4406 MRSIFDLEVEASVKNESEVSSQAESNISAPDTCAVPSCESLANSSPITNPVGAQPNPKPVTLDLTLNNDGNESIGLTLSSTSESSNEPAVHTTASTIPRVFSCNYCQRKFYSSQALGGHQNAHKRERMLAKRAMRMGLFSDRYASLASLPLHGSFRSLGIKAHSSLHHGFSTSIRPPEIKGNARFEQGYLGASAPVFLDNVEGDQFMWPGSFRHAAEAGPSHHPHTSFPLTGRNLSFTDVTTTTDIDNSMPDLTLKL* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00617 257 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Pte8g00617 257 SUPERFAMILY beta-beta-alpha zinc fingers 99 128 IPR036236 -
Pte8g00617 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Pte8g00617 257 Gene3D Classic Zinc Finger 79 145 - -
Pte8g00617 257 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 54 174 IPR044246 GO:0009788
Pte8g00617 257 FunFam Zinc finger protein 2 78 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00617 Pte-Chr8 28733033 28735638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00617 83 258 C2H2 Transcription Factor Family AT1G66140 50.500 2.59e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte8g00617 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00617 - - gmx:100788768 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte8g00617 8 28733033 28735638 Pte8g00617 8 28733033 28735638 RCT