Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00595 ATGAGTTCTAGGGGAAATGACAGTGGTTCAGGTGATCAACAGGGAGGTTCCAGTTCTCGCAGGGGAAAGAAGCCTTACCATCGTCACACATCTCACCAGATACAGCGACTTGAAGCTTTTTTCAAGTACTGCCCACACCCTGATGACAATCAACGGACCCAATTGGGTAGGGAGATCGGGCTTGAGCCAAGCCAAGTAAAATTTTGGTTTCAGAATAAGAGAACTCATCTAAAGACTCAAAGTGAGCATGCAGATAATGCTACTCTCAAAGCTGAGAATGAAAGCATCCGTTTTGAAAACCTTGTTATCAGAGATGCATTGGAGAATGCACTGTGTGATTCCTGTAGGGGTGCCACCTTAGGAGAAGAAGAACGCCACCGTTACCTACAGTCACTGACGCTGGAGAATGCTCGCTTAAGAGAAGAGCATGAGAAGTTATCAATCTTTGTAGCAGGTTGTGTGGGGAAAATGGCACTACTTGACCCTTTTATCAGTGCTACAGGATCTCCCTTGGATTTACCATCAGGAAGTTCCATAACTATGAGAAGTCCGGTCTCAGATCATTTTTCTTTTCCTACATCTTCAAACGGCACCATGTTGCATCACCGAATAGGAGGAATTACAGCTATGGAGAATGCCCAAATGAGGGAGATTGTTGCTGGTGCCATGGGGGAATTAGTCAGGCTTTTGCAGTCTAACGAACCCTTTTGGATGAAATCTTCTGATGATGATGGATTTATACTTAATCATGACAAATATGATAGGATATTCCCTAGGAACCATTTCAAAAACCCTGGTGCTCGTGTTGAGTCATCGAAAGACTCGGGAACGGTGTCTATGAATGCAATCCAATTGGTTGACATACTTCTAGATTCGGATAAATGGATGGATCTTTTTCCAACCATCATTACAAAAGCTAAGACACTCCATGTGGTTGAAAATGGTTTAATAGGAAATAGAAGTGGTGCCTTGCAACTGATGCATCAGCAAATGCACACTCTTTCACCTTTGGTTCCAATTCGAGAATTCTACTTTCTTCGCCATTGTCAGCAGATTGAGATAGGGACATGGGTGATTGTGGATGTTTCTTGTGATTGCTTCAAACAGAATGATTCCTCTCCCTGGTCTTGGAGGTTTCCTTCTGGATGCATGATTCATCAAATATCCAACAGTTGCTCGGAGGTTACTTGGGTAGAGCATGTGGAAGTGGATGATGAAACCCAAATTCATCAGCTTTACAGGGATCTTGTTTGTAGCAATGTTGTGTATGGAGCACAAAGGTGGATTGCCACACTTCAGAGAATGTGCAAGAGACTTATGTCCACTTCTAATGGAAGTCCTTCAAGTCACGAATTTTTACGTGGAGAAGGTAGGAGGAGGCTCATGAAGCTTTCCCACCGGATGGTCAAGAATTTCTGTGGAGTTTTGAGCATGCCTGGGAAGCTGAACTTGACTCAGTTGTCCGAAGTGAAAAATAGTGGGGTTCAATTCTCTGTTCGTGAGAACAAGGAACGAGGATACCCAGATGGCCTGATTATCTCTGCTGCTACCTCCCTGTGGATACCTCTGCCATCTCAAAATGTTTTTGACTTCTTTCGAGACGAGAAAACTCGGGCCCAGTGGGATGTTCTTACTGATGGAAATCCAGTTCTGGAGATTTTGAATGTCACGAATGGAATTCATTCAAGGAATTGCATATCCATTATTCAGTCTTTTGTCCCTTCTGAGCAAGGCATGGTGGTGCTTCAAGAAATCTGTGTTGACCCTCTGGCTTCCATGATAATATATGCTCCAATTGATGTCTCATTGATAAAAGTTGCAGTGAACCACAATGATTCTTCAAGCATACCCATCTTACCATCAGGCCTCATAGTCTCCAGCGATGGACACCATGAAAGCATCACGGGAGCATCTACTAGTTCAAATGCCAGTCGCGGCGGTGGTTCACTGCTAACCATGTTTTTTCAGGTTCTGGCTACCAACCTTTCAGTTCCAAAGCAGCTGAATGCTGAAGCCATTTTAACAGTGAATGCTCTAGTGAGCTGCACTGTCAAAAAAATTAAAGCTGCTTTACACTGTTGTGAGCTCGATCAGATTTCCACCATGTAG 2109 0.4372 MSSRGNDSGSGDQQGGSSSRRGKKPYHRHTSHQIQRLEAFFKYCPHPDDNQRTQLGREIGLEPSQVKFWFQNKRTHLKTQSEHADNATLKAENESIRFENLVIRDALENALCDSCRGATLGEEERHRYLQSLTLENARLREEHEKLSIFVAGCVGKMALLDPFISATGSPLDLPSGSSITMRSPVSDHFSFPTSSNGTMLHHRIGGITAMENAQMREIVAGAMGELVRLLQSNEPFWMKSSDDDGFILNHDKYDRIFPRNHFKNPGARVESSKDSGTVSMNAIQLVDILLDSDKWMDLFPTIITKAKTLHVVENGLIGNRSGALQLMHQQMHTLSPLVPIREFYFLRHCQQIEIGTWVIVDVSCDCFKQNDSSPWSWRFPSGCMIHQISNSCSEVTWVEHVEVDDETQIHQLYRDLVCSNVVYGAQRWIATLQRMCKRLMSTSNGSPSSHEFLRGEGRRRLMKLSHRMVKNFCGVLSMPGKLNLTQLSEVKNSGVQFSVRENKERGYPDGLIISAATSLWIPLPSQNVFDFFRDEKTRAQWDVLTDGNPVLEILNVTNGIHSRNCISIIQSFVPSEQGMVVLQEICVDPLASMIIYAPIDVSLIKVAVNHNDSSSIPILPSGLIVSSDGHHESITGASTSSNASRGGGSLLTMFFQVLATNLSVPKQLNAEAILTVNALVSCTVKKIKAALHCCELDQISTM* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00595 702 SUPERFAMILY Homeodomain-like 7 80 IPR009057 -
Pte8g00595 702 MobiDBLite consensus disorder prediction 1 20 - -
Pte8g00595 702 SMART START_1 217 438 IPR002913 GO:0008289
Pte8g00595 702 SMART HOX_1 22 84 IPR001356 GO:0003677
Pte8g00595 702 FunFam Homeobox-leucine zipper protein HDG1 10 96 - -
Pte8g00595 702 CDD START_ArGLABRA2_like 213 436 - -
Pte8g00595 702 Pfam START domain 222 438 IPR002913 GO:0008289
Pte8g00595 702 ProSiteProfiles START domain profile. 208 441 IPR002913 GO:0008289
Pte8g00595 702 SUPERFAMILY Bet v1-like 210 439 - -
Pte8g00595 702 CDD homeodomain 23 81 IPR001356 GO:0003677
Pte8g00595 702 Pfam Homeodomain 23 78 IPR001356 GO:0003677
Pte8g00595 702 Gene3D - 215 419 IPR023393 -
Pte8g00595 702 MobiDBLite consensus disorder prediction 1 31 - -
Pte8g00595 702 SUPERFAMILY Bet v1-like 456 658 - -
Pte8g00595 702 Gene3D - 9 96 - -
Pte8g00595 702 ProSiteProfiles 'Homeobox' domain profile. 20 80 IPR001356 GO:0003677
Pte8g00595 702 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 692 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00595 Pte-Chr8 28463631 28468375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00595 21 691 Homeobox Transcription Factor Family AT1G73360 43.994 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte8g00595 START 3.7e-39 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00595 K09338 - cave:132182686 785.408