Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00578 ATGAAGCTTTCAACATCAGGATTGAGTCAGCAGGGAAATGAAGGGGAGAAGAAATGTTTGAATTCAGAGCTATGGCATGCATGTGCAGGACCACTTGTGTCTCTGCCTAATGCAGGGACTCGAGTGGTTTACTTTCCTCAGGGCCATAGCGAGCAGGTTGCTGCTACAACTAACAGAGAAATTGATGGCCAAATACCAAATTACCCAAGCTTGCCTCCACAGTTAATATGCCAACTCCATAACATTACCATGCATGCAGATGTTGAGACAGATGAAGTATACGCCCAAATAACATTGCAGCCGCTGACAGCGCAAGAGCAAAAGGAGAGATTTCTTCCTACGATTCTGGGAGTTCCAAGTAAGCAGCCTACTAATTATTTCTATAAGATGTTGACAGCAAGTGATACCAGTACTCATGGAGGGTTCTCTGTTCCACACCGTGCTGCTAAGAAAGTTTTTCTTCCCCTGGTAATTTTACTGATTTGTTTGACAAGTTTTGTGTTAGACATTGATACATTCTTTCCTCTACTTTTTTGGATTCTACAGGAATTTTCTCAACAACCTCTTGCTCAAGAACTGATTGCAATGGATCTACATGATGTCGAGTGGAAGTTTAGGCATATTTTTCGGGGACAGCCCAAACGGCACCTTCTTACCACTGGCTGGAGTGTGTTTGTCAGTGCCAAGAGACTCATTGCCGGAGATTCTGTACTTTTTATATGGAATGAAAAAAATCAGCTTCTGTTGGGAATTCGCCGTGCCAATCGACCACAAACTGTCATGCCTTCATCTGTCCTGTCAAGTGATAGCATGCACATTGGACTCCTTGCTGCTGCTGCTCATGCTGCTTCCACAAATAGCTGTTTTACGGTTTTCTATAATCCTAGGGCTAGTCCATCAGAATTTGTGATTCCTCTCTCCAAATATGTCAAAGCTGTATATCACACACGTGTGTCAGTTGGGATGCGATTCCGGATGCTGTTTGAGACTGAAGAGTCCAGTGTCCGCAGGTACATGGGTACAATAACTGGAATCAGTGATCTGGACCCTGTTCGTTGGCCAAATTCTCATTGGCGATCAGTCAAGGTTGGTTGGGATGAATCGACAGCAGGAGATAGACAGCCAAGAGTGTCATTATGGGAAATTGAACCCTTAACAACATTCCCCATGTATCCTTCACTATTTCCCCTTAGACTGAAACGTCCATGGTATCCAGGGGTCTCTACTGATGGCAGGGATGAAGCAACCAACTTGATGTGGTTAAGAGGTGGGGCTGGAGATGCAAACCTCAACTCCCTTAACTTTCAAGGGGTTGGGATGTTGCCTTGGATGCAGCAGAGACTGGATCCAACTCTGTTAGGCCAAGACCACAATCAGCAATACCAAGCCATGCTGGCAGCTGGTTTGCAAAACATGGGTGGTGGTGAAATTTTAAGGCAACAACTTATGCACTTTCAGCAGCCTTTCCAGTATCTTCAGCAATCTGGAAGCCACAATTCTCTGTTGCAGCTTCAGCAGCAGCAAGCACTTCAACAATCATTGGCACCCAGTATCCTGCAGCAGCAACCCCAACTTGCTGCAGAAAACATGTCCCAGCATATACTTCAGCACCAATTTAACAATCAGGGTCAGAATCAATCACAACAGCAGCAAGATACTTTTAGAGACACCCTTTTAATTCAAAATGATCAGCTTAACCAGAGGCAACAGTTGAATGTTCCTTCTCCATCATATTCAAAACCAGACTTCATGGACTTAACCACAAAGTTCCAAACTTCTGTTTCCCCTACACAAAGCATGCTTAGTCCTCTTTGTCTTGAAGCAAGTAGCACTGTTCAGACTTTATCCAGAAGTGCTCAGTCTGTGCCATGCGAGCACTTGCACCAACCATCGTGGACTTCTAAGTATTCGGCTATGGAGATTAACGCGTTAGGCAACTCAGCTTCACGTACAGATATTCCTGGAAGAGATCCTGCTGTGGCACCACATATTAACTCTGATAATCACAATCCTACTCTTTTTGGTGTAAATATTGATTCATCTGGCCTATTACTTCCAACAACTGTACCTCGATCTTCAATTGATGATGATGCGTCTACAATGCCATTAAGGGATCCGGGATATCAAAGTTCTTTGTATAATTGTGTGCAAGACTCATCTGGGTTGTTGCAGAGTGCAGCTCAAGTTGAGTCAAACCCACCTCCAACATTTGTTAAGGTCTGCATAATGAATTTAAAGGTTGTGTTGAAAATGCTGCATGTTAATCATATAATGATGAAGATTCTAAGGCTTTATGCAGGTTTACAAATCTGGTTCGATTGGGCGATCACTGGACATCTCGCGCTTCAGCAGCTACAATGA 2361 0.4388 MKLSTSGLSQQGNEGEKKCLNSELWHACAGPLVSLPNAGTRVVYFPQGHSEQVAATTNREIDGQIPNYPSLPPQLICQLHNITMHADVETDEVYAQITLQPLTAQEQKERFLPTILGVPSKQPTNYFYKMLTASDTSTHGGFSVPHRAAKKVFLPLVILLICLTSFVLDIDTFFPLLFWILQEFSQQPLAQELIAMDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSCFTVFYNPRASPSEFVIPLSKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWYPGVSTDGRDEATNLMWLRGGAGDANLNSLNFQGVGMLPWMQQRLDPTLLGQDHNQQYQAMLAAGLQNMGGGEILRQQLMHFQQPFQYLQQSGSHNSLLQLQQQQALQQSLAPSILQQQPQLAAENMSQHILQHQFNNQGQNQSQQQQDTFRDTLLIQNDQLNQRQQLNVPSPSYSKPDFMDLTTKFQTSVSPTQSMLSPLCLEASSTVQTLSRSAQSVPCEHLHQPSWTSKYSAMEINALGNSASRTDIPGRDPAVAPHINSDNHNPTLFGVNIDSSGLLLPTTVPRSSIDDDASTMPLRDPGYQSSLYNCVQDSSGLLQSAAQVESNPPPTFVKVCIMNLKVVLKMLHVNHIMMKILRLYAGLQIWFDWAITGHLALQQLQ* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00578 786 SUPERFAMILY DNA-binding pseudobarrel domain 176 282 IPR015300 -
Pte8g00578 786 CDD B3_DNA 126 253 IPR003340 GO:0003677
Pte8g00578 786 Gene3D - 317 389 - -
Pte8g00578 786 Gene3D - 125 254 IPR015300 -
Pte8g00578 786 Pfam B3 DNA binding domain 127 254 IPR003340 GO:0003677
Pte8g00578 786 ProSiteProfiles B3 DNA-binding domain profile. 163 255 IPR003340 GO:0003677
Pte8g00578 786 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 599 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte8g00578 786 SUPERFAMILY DNA-binding pseudobarrel domain 111 156 IPR015300 -
Pte8g00578 786 Pfam Auxin response factor 279 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte8g00578 786 SMART B3_2 127 255 IPR003340 GO:0003677
Pte8g00578 786 FunFam Auxin response factor 317 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00578 Pte-Chr8 27814440 27822554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00578 97 740 B3 DNA Binding Superfamily AT5G37020 59.939 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte8g00578 B3 3.6e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00578 - - gmx:100784804 1048.88