Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00561 ATGAAGCTTTCAACATCAGGATTGAGTCAGCAGGGAAATGAAGGGGAGAAGAAATGTTTGAATTCAGAGCTATGGCATGCATGTGCAGGACCACTTGTGTCTCTGCCTAATGCAGGGACTCGAGTGGTTTACTTTCCTCAGGGCCATAGCGAGCAGGTTGCTGCTACAACTAACAGAGAAATTGATGGCCAAATACCAAATTACCCAAGCTTGCCTCCACAGTTAATATGCCAACTCCATAACATTACCATGCATGCAGATGTTGAGACAGATGAAGTATACGCCCAAATAACATTGCAGCCGCTGACAGCGCAAGAGCAAAAGGAGACATTTCTGCCCATGGAACTGGGAGTTCCAAGTAAGCAGCCTACTAATTATTTCTGCAAGACGTTAACAGCAAGTGATACCAGCACTCATGGAGGGTTTTCTGTTCCACGTCGTGCTGCTGAGAAAGTTTTTCCTCCCCTGGATTTTTCACAGCAACCTCCTGCTCAAGAACTGATTGCAAGGGATCTCCATGATGTCGAGTGGAAGTTTAGGCATATTTTTCGGGGACAGCCCAAACGGCACCTTCTTACCACTGGCTGGAGTGTGTTTGTCAGTGCCAAGAGACTCATTGCCGGAGATTCTGTACTTTTTATATGGAATGAAAAAAATCAGCTTCTGTTGGGAATTCGCCGTGCCAATCGACCACAAACTGTCATGCCTTCATCTGTCCTGTCAAGTGATAGCATGCACATTGGACTCCTTGCTGCTGCTGCTCATGCTGCTTCCACAAATAGCTGTTTTACGGTTTTCTATAATCCTAGGGCTAGTCCATCAGAATTTGTGATTCCTCTCTCCAAATATGTCAAAGCTGTATATCACACACGTGTGTCAGTTGGGATGCGATTCCGGATGCTGTTTGAGACTGAAGAGTCCAGTGTCCGCAGGTACATGGGTACAATAACTGGAATCAGTGATCTGGACCCTGTTCGTTGGCCAAATTCTCATTGGCGATCAGTCAAGGTTGGTTGGGATGAATCGACAGCAGGAGATAGACAGCCAAGAGTGTCATTATGGGAAATTGAACCCTTAACAACATTCCCCATGTATCCTTCACTATTTCCCCTTAGACTGAAACGTCCATGGTATCCAGGGGTCTCTACTGATGGCAGGGATGAAGCAACCAACTTGATGTGGTTAAGAGGTGGGGCTGGAGATGCAAACCTCAACTCCCTTAACTTTCAAGGGGTTGGGATGTTGCCTTGGATGCAGCAGAGACTGGATCCAACTCTGTTAGGCCAAGACCACAATCAGCAATACCAAGCCATGCTGGCAGCTGGTTTGCAAAACATGGGTGGTGGTGAAATTTTAAGGCAACAACTTATGCACTTTCAGCAGCCTTTCCAGTATCTTCAGCAATCTGGAAGCCACAATTCTCTGTTGCAGCTTCAGCAGCAGCAAGCACTTCAACAATCATTGGCACCCAGTATCCTGCAGCAGCAACCCCAACTTGCTGCAGAAAACATGTCCCAGCATATACTTCAGCACCAATTTAACAATCAGGGTCAGAATCAATCACAACAGCAGCAAGATACTTTTAGAGACACCCTTTTAATTCAAAATGATCAGCTTAACCAGAGGCAACAGTTGAATGTTCCTTCTCCATCATATTCAAAACCAGACTTCATGGACTTAACCACAAAGTTCCAAACTTCTGTTTCCCCTACACAAAGCATGCTTAGTCCTCTTTGTCTTGAAGCAAGTAGCACTGTTCAGACTTTATCCAGAAGTGCTCAGTCTGTGCCATGCGAGCACTTGCACCAACCATCGTGGACTTCTAAGTATTCGGCTATGGAGATTAACGCGTTAGGCAACTCAGCTTCACGTACAGATATTCCTGGAAGAGATCCTGCTGTGGCACCACATATTAACTCTGATAATCACAATCCTACTCTTTTTGGTGTAAATATTGATTCATCTGGCCTATTACTTCCAACAACTGTACCTCGATCTTCAATTGATGATGATGCGTCTACAATGCCATTAAGGGATCCGGGATATCAAAGTTCTTTGTATAATTGTGTGCAAGACTCATCTGGGTTGTTGCAGAGTGCAGCTCAAGTTGAGTCAAACCCACCTCCAACATTTGTTAAGGTCTGCATAATGAATTTAAAGGTTGTGTTGAAAATGCTGCATGTTAATCATATAATGATGAAGATTCTAAGGCTTTATGCAGGTTTACAAATCTGGTTCGATTGGGCGATCACTGGACATCTCGCGCTTCAGCAGCTACAATGA 2283 0.4481 MKLSTSGLSQQGNEGEKKCLNSELWHACAGPLVSLPNAGTRVVYFPQGHSEQVAATTNREIDGQIPNYPSLPPQLICQLHNITMHADVETDEVYAQITLQPLTAQEQKETFLPMELGVPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSCFTVFYNPRASPSEFVIPLSKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWYPGVSTDGRDEATNLMWLRGGAGDANLNSLNFQGVGMLPWMQQRLDPTLLGQDHNQQYQAMLAAGLQNMGGGEILRQQLMHFQQPFQYLQQSGSHNSLLQLQQQQALQQSLAPSILQQQPQLAAENMSQHILQHQFNNQGQNQSQQQQDTFRDTLLIQNDQLNQRQQLNVPSPSYSKPDFMDLTTKFQTSVSPTQSMLSPLCLEASSTVQTLSRSAQSVPCEHLHQPSWTSKYSAMEINALGNSASRTDIPGRDPAVAPHINSDNHNPTLFGVNIDSSGLLLPTTVPRSSIDDDASTMPLRDPGYQSSLYNCVQDSSGLLQSAAQVESNPPPTFVKVCIMNLKVVLKMLHVNHIMMKILRLYAGLQIWFDWAITGHLALQQLQ* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00561 760 SMART B3_2 127 229 IPR003340 GO:0003677
Pte8g00561 760 SUPERFAMILY DNA-binding pseudobarrel domain 111 256 IPR015300 -
Pte8g00561 760 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte8g00561 760 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 573 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte8g00561 760 Gene3D - 125 228 IPR015300 -
Pte8g00561 760 FunFam Auxin response factor 291 363 - -
Pte8g00561 760 FunFam Auxin response factor 125 229 - -
Pte8g00561 760 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Pte8g00561 760 Gene3D - 291 363 - -
Pte8g00561 760 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Pte8g00561 760 CDD B3_DNA 126 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00561 Pte-Chr8 27280558 27287929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00561 97 714 B3 DNA Binding Superfamily AT5G37020 63.981 0.0 719
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte8g00561 B3 7.8e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00561 - - gmx:100784804 1092.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte8g00561 8 27280558 27287929 Pte8g00561 8 27280558 27287929 RCT