Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00548 ATGGAGTCTGTTCTCAAGATATACTTTGGGTTCTCGACTTTCAGGGATTACCAGAAGAAAGTCATTGAGACCATTCTTGAGAAAAGGGATTGTTTGGTGGTAATGGCTACTGGCAGTGGAAAATCGTTGTGCTACCAGGTTCCTCCTTTGGTTGTGAAAAAGACCGGGATAGTGGTGAGCCCTCTTATATCATTAATGCAAGATCAGGTTATGACTTTAAAACAAAGGGGCATCGAAGCTGAGTATCTGGGAAGTACTCAAACTGATGTTACAGTCCAGAGCAAAGCTGAGAGAGGTCAATTTGATATTCTGTACATGACTCCTGAGAAGGCATGCTCGATTCCTACAAGTTTCTGGTCCAATTTGCTAAAGAACGGCATTTCTGTGTTTGCTGTTGATGAAGCTCATTGCATATCAGAGTGGGGTCATGATTTCAGGGTGGAATACAAGCAGCTGGACAAGTTGCGAAGTATTCTTCCAAATGTTCCCTTTGTTGCCCTTACTGCTACAGCTACTGAAAAGGTTCGAGTTGACATAATCAATTCCTTGAAGATGAATGATCCTTATATTTCCATTGGCTCATTTGATCGTGAAAATCTCTTTTACGGCGTAAAGCCATTTAGTCGTGGCACATATTTTGTGAAAGAACTTGTTCAAGAAATTTCGAAATTTGTTGAAAGCAGTGGTTCTACAATAATCTATTGTACAACAATTAAAGATGTGGAACAGATAGCAGAGTTGCTTCAGGAATCTGGAATTAGATTTGGGATCTATCATGGTCAACTGAATAAAAAAGCTCGTGAGGAGTCTCACAGATTGTTTGTAAGAGATGAATTGCAGGTCATGGTTGCAACAATTGCTTTTGGAATGGGTATTGATAAGCCCGATATTAGACAGGTAATTCACTATGGCTGCCCTAAGAGCCTAGAATCCTACTATCAGGAAAGTGGAAGATGTGGTAGAGACGGTGTGCCTTCTGTGTGCTGGCTTTACTACACAGCAAGTGACTTCACAAAGGGTGACTTCTACTGTGGTGAATTACGAAGTGAAAACCAAAGAAGAGCTGTCATGGAATCTCTGTTGACTGCACAACGATATTGTTTATCAACAAACTGCAGAAGGAAGTTCCTGCTTAATCACTTTGGAGAGAAGTTTGATGCTGATAGATGTGGAAACTGTGATAACTGCATTGTAATCAGGAAGGAGCGTGACATGTCCAAGGAAGCATTTCTTCTAATGGCATGCATTCGATCATGCAGAGGTAGCTGGGGCCTAAATATGCCTATTGACATTCTTCGTGGATCTCGGTCTAGAAGGATTCTTGATGCTGAGTTTGACAAACTTCCTCTTCATGGACTTGGGAAGGTCTACTCGGCGAATTGGTGGAAAGCACTGGCTCATCAACTGATTTCTAATGGTTATTTGAAGGAGACTGTAAGGGATGGGTATAGAACTACAAGTGTCAGTTCCAAAGGAGAGCAGTTCCTTGCATCTGCTACACCTGATCATCAGCCACCATTAGTTTTGCCCGTGACTGATGAAATGGTTGATGAAAATCATCGTGAAGAGAGTGGAGCAACAGAAGCTGATGGAATAAAAAATTTGACGACTTTAATGCGTGAAGGGCTTTCAGAGCCTGAGGAGCAACTGTATCACATGCTTATGGAAGAGAGATTAAAGCTTGCCAGAAGTATTGGAACTGCTCCGTATGCCTTATGTGGTGATCAGACGATGAAAAGATTTGCTTTGACAAGACCTTCTACGAAAGCAAGGCTTTCAAATATTGATGGTGTGAATCAGCACTTCCTTGTGACATATGGAGATCATTTCCTTGAAATTATTCGAAAATTATCACAAGGTTTAAATGTTCCATTGGATGGGGAAGTAAGCATACAAAACACAGTAACAAAAGTGTCATCAGCAAGCAGCCGACAAGGGAAGCTGACACCAGCAAAGTTTGAAGCTTGGAGAATGTGGCATGAAGATGGTCTTTCCATTCAGAAGATTGCTAATTTTCCTGGTAGATCGGCTCCTATAAAAGAGGAAACTGTTTTTGATTATCTCTTGGAGGCTGCTCGAGAAGAATTGGATTTTGATTGGAAAAGATTCTGTGAAGCTCTTGGATTGACGAGGGAAATATACTTGGCAATTTGGGATGCTATTTCAAAGGTTGGATCTACAGAGAAGTTGAAGCCCATAAAAAATGAATTACCAGATGACATAAGTTACTTACAAATCAGGGCTTCACTAGCAATGCAGAAATGTGGAATATCTTCTGATGTCATTTTCCCTGCCTGCCACCTTAGAGCAACGGATGGTAAGCTATTAAGTGATGTATCGGCTATGTCATCACTTTCTACAGACCACCATGGAAGAGATGACACCATAGCTAAGGTTCCTGTTTTTATTTGTGAACTAGACAAGAGTGATAAAATGACTGCCGGTGCTGTCGATGAAGGCCAACAGGTAGTTCCTCTGATCAGTAATGAAGATCAACTGACACACAAACGCCAAAAAGTCAGTCAAGTCGAGGGGCAATTGGAATCTGAACTGAAGGCAACTGAAAGTAATGTTGTCGAATGGCTAGGGAACTACAATGAAGGGGTTACACTGCATGATATTCTGGAGCATTTTAAGGGATCTAATGAAGAATCTGTGGTTCAAGTTCTGAATTGCCTTGAAAGTGACTTTTTGATATACAAGAAGAATGATATATACAAGGTCATGTAA 2730 0.4103 MESVLKIYFGFSTFRDYQKKVIETILEKRDCLVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMTLKQRGIEAEYLGSTQTDVTVQSKAERGQFDILYMTPEKACSIPTSFWSNLLKNGISVFAVDEAHCISEWGHDFRVEYKQLDKLRSILPNVPFVALTATATEKVRVDIINSLKMNDPYISIGSFDRENLFYGVKPFSRGTYFVKELVQEISKFVESSGSTIIYCTTIKDVEQIAELLQESGIRFGIYHGQLNKKAREESHRLFVRDELQVMVATIAFGMGIDKPDIRQVIHYGCPKSLESYYQESGRCGRDGVPSVCWLYYTASDFTKGDFYCGELRSENQRRAVMESLLTAQRYCLSTNCRRKFLLNHFGEKFDADRCGNCDNCIVIRKERDMSKEAFLLMACIRSCRGSWGLNMPIDILRGSRSRRILDAEFDKLPLHGLGKVYSANWWKALAHQLISNGYLKETVRDGYRTTSVSSKGEQFLASATPDHQPPLVLPVTDEMVDENHREESGATEADGIKNLTTLMREGLSEPEEQLYHMLMEERLKLARSIGTAPYALCGDQTMKRFALTRPSTKARLSNIDGVNQHFLVTYGDHFLEIIRKLSQGLNVPLDGEVSIQNTVTKVSSASSRQGKLTPAKFEAWRMWHEDGLSIQKIANFPGRSAPIKEETVFDYLLEAAREELDFDWKRFCEALGLTREIYLAIWDAISKVGSTEKLKPIKNELPDDISYLQIRASLAMQKCGISSDVIFPACHLRATDGKLLSDVSAMSSLSTDHHGRDDTIAKVPVFICELDKSDKMTAGAVDEGQQVVPLISNEDQLTHKRQKVSQVEGQLESELKATESNVVEWLGNYNEGVTLHDILEHFKGSNEESVVQVLNCLESDFLIYKKNDIYKVM* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00548 909 SMART hrdc7 544 624 IPR002121 GO:0003676
Pte8g00548 909 Pfam Helicase conserved C-terminal domain 217 322 IPR001650 -
Pte8g00548 909 Gene3D - 1 195 IPR027417 -
Pte8g00548 909 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 368 IPR001650 -
Pte8g00548 909 SMART RQC_2 404 508 IPR018982 GO:0006260|GO:0006281|GO:0043138
Pte8g00548 909 FunFam ATP-dependent DNA helicase 197 398 - -
Pte8g00548 909 Pfam Helix-turn-helix domain 654 748 IPR029491 -
Pte8g00548 909 Pfam HRDC domain 547 614 IPR002121 GO:0003676
Pte8g00548 909 FunFam ATP-dependent DNA helicase 1 195 - -
Pte8g00548 909 Gene3D HRDC domain 543 623 IPR044876 -
Pte8g00548 909 CDD SF2_C_RecQ 197 332 - -
Pte8g00548 909 Pfam DEAD/DEAH box helicase 16 175 IPR011545 GO:0003676|GO:0005524
Pte8g00548 909 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 22 189 IPR014001 -
Pte8g00548 909 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 668 - -
Pte8g00548 909 Pfam RQC domain 401 497 IPR018982 GO:0006260|GO:0006281|GO:0043138
Pte8g00548 909 Gene3D - 197 398 IPR027417 -
Pte8g00548 909 Pfam RecQ zinc-binding 347 396 IPR032284 -
Pte8g00548 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 334 IPR027417 -
Pte8g00548 909 SUPERFAMILY HRDC-like 539 619 IPR010997 GO:0000166|GO:0044237
Pte8g00548 909 SUPERFAMILY "Winged helix" DNA-binding domain 400 500 IPR036390 -
Pte8g00548 909 NCBIfam RecQ family ATP-dependent DNA helicase 3 455 IPR004589 GO:0004386|GO:0006310
Pte8g00548 909 Gene3D - 399 525 IPR036388 -
Pte8g00548 909 CDD DEXHc_RecQ 2 196 - -
Pte8g00548 909 SMART helicmild6 242 323 IPR001650 -
Pte8g00548 909 FunFam ATP-dependent DNA helicase 399 523 - -
Pte8g00548 909 ProSiteProfiles HRDC domain profile. 544 624 IPR002121 GO:0003676
Pte8g00548 909 SMART ultradead3 10 205 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00548 Pte-Chr8 27031617 27042862 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00548 2 337 Eukaryotic Initiation Factors Gene Family AT3G19760 21.937 3.42e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00548 K03654 - jre:108989185 1286.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte8g00548 8 27031617 27042862 Pte8g00548 8 27031617 27042862 RCT