LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte8g00547	ATGATCTCCAGACAATGGTGGCAATCGACTACTGAGCATATTCAAATTCTTGAGAACATATTCAATCAAGGAATTGCTACTCCAACCAGGGAAAATGTCAAAGAAGTAACTGCTGAACTGAAATTGTATGGAGACGTGAAGGAAACAAATGTGTATAATTGGTTTCAGAATAGGCGTGCAAGGAAAAGAAAACGAAAATTCCAACCAAACAACAAAAATGTTGTGCAGCCTCAAGTGGACATTGAAAATAAGTCAACAAAGCTCAACAACAGTACTCTTCATTCCTATGGTGAATTCGCTGGAAGGTATAACGAACGCTACTTCCTATATCCTAATGGATCTTCTGATATGCATTTTCTAGGTCCTCATACAAACGAGGAAGATCCTATTGCCATGCTTGTATCAGACGACAGTCTAAATCCAACACTGAGTTACACTCCATTGGCAGTTTGGGAAGAGCTGCTCTCCGATTTAAAATATAGAGGGGTGGTAACAAGATTTATGAGGTCTTTCATCGTGGAGGTGGGGGGTATGTGGTTCATACAATGTGTAAGTGCACTAAGTAAACTGGTTGAAGGAGCTCCACCATTGGCTTTATTGTAG	603	0.4013	MISRQWWQSTTEHIQILENIFNQGIATPTRENVKEVTAELKLYGDVKETNVYNWFQNRRARKRKRKFQPNNKNVVQPQVDIENKSTKLNNSTLHSYGEFAGRYNERYFLYPNGSSDMHFLGPHTNEEDPIAMLVSDDSLNPTLSYTPLAVWEELLSDLKYRGVVTRFMRSFIVEVGGMWFIQCVSALSKLVEGAPPLALL*	201

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte8g00547	200	ProSiteProfiles	'Homeobox' domain profile.	10	65	IPR001356	GO:0003677
	Pte8g00547	200	PANTHER	WUSCHEL-RELATED HOMEOBOX 13	3	148	IPR044559	GO:0003700
	Pte8g00547	200	Gene3D	-	7	72	-	-
	Pte8g00547	200	Pfam	Homeodomain	5	64	IPR001356	GO:0003677
	Pte8g00547	200	SMART	HOX_1	2	69	IPR001356	GO:0003677
	Pte8g00547	200	CDD	homeodomain	10	57	IPR001356	GO:0003677
	Pte8g00547	200	SUPERFAMILY	Homeodomain-like	4	65	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte8g00547	Pte-Chr8	27029242	27030184	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte8g00547	1	128	Wox Gene Family	AT4G35550	34.228	1.51e-20	84.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-WOX	Pte8g00547		Homeodomain	9.7e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte8g00547	-		-	qlo:115995319	117.857