Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00538 ATGTCGTATGTACCTCCACATCTCAGGAATTCAAGCTCAACTTCCGTTGCTACTCGTACCTTGTCATCTCTAACCCTAGACAACCATGATCCTTCCACAGCCAAGCTCTCTTCACTATCCAATTCTCACCTTAATAATACTTCCGCAGCTTCCTTATCCAACGGCTCTCGACGGAGCTCTGCTACTCACACTGTACCTGACCCTGTCTTTCCTCACTGGACTCCTTCTGAACGCGTTTCTCGCATGAGTCCCGAACAGATTGAAGAAGTCCGTTTACGGTTGAATGTTGATGTTACCGTCGCTTCTGGTTCGCTTCCTGCTCCTGCACCGATTGAGTCTTTTACGGACATGTGTTTGCATCCAAGCATTATGAAGGATATTACGATTCATGAGTATAGTAGACCTACTCCAATTCAGGCGCAGGCTGTGCCTGTTGCTCTCAGTGGAAGGGATCTCCTGGGTTGTGCTGAAACTGGTAGCGGTAAAACCGCAGCTTTCACAATTCCTATGATACAGCACTGCCTGTCTCAATCTCCTATTAGGCGTGGTGATGGTCCCTTGGCACTAGTACTTGCCCCAACAAGAGAGCTTGCCCAACAAATAGAGAAAGAGGTTAAAGCTTTTAGCCAATCTCTCGAGTCATTTAAGACTGCATTGGTTGTGGGTGGAACAAATATTGTCGAGCAGAGGTCTGAGTTAAGAGCGGGGGTTGATATTGTGGTTGCTACACCTGGGAGATTTATCGATCATTTACAACAAAGAAACACTTCTCTTTCTAGAATTTCTTTTATTGTTCTTGATGAGGCTGATAGAATGCTTGATATGGGCTTTGAGCCACAAATCAGAGAGGTCATGAGGAGCCTTCCAGATAAGCATCAAACTTTATTATTTAGCGCTACTATGCCTGTGGAGATTGAAGAATTGGCTCAAGAATACTTGACAAAACCTGTACGAGTGAAAGTGGGAAAAGTGAGTTCTCCAACAGCAAATGTTTCTCAAACACTCCTGAAGGTATCTGAAAGTGAGAAGATTGATAGACTTCTAGCTCTGCTGGTGGAAGAGTCATCAGATGCTGAAAAATGTGGCCATCCCTTTCCGTTAACTATTGTGTTTGTGGAAAGGAAGACAAAATGTGAGGAAGTTGTGGAAGCATTGGTGGCACAAGGGTTGCCTGCAGTTTCTCTTCATGGTGGTCGTAGTCAAACTGAAAGGGAGACTGCTTTGCGTGATTTTAGAAATGGCTCTACTAGTATTTTGATAGCGACTGATGTTGCATCTCGTGGCTTAGATGTCACAGGAGTAGCACATGTTATCAATCTAGATCTTCCCAAGACCATAGAAGATTATGTACACCGGATAGGAAGGACAGGCCGGGCAGGATCAACAGGCCAGGCTACTTCATTTTACACTGATCGTGATATGTTTCTTGTGGCACACATAAAGAAAGCTATATCAGATGTTGAATCAGGAAATGCTGGTGCATTTGCAACTGGAAAGGCTGCCAGAAGGAAGGAAAGAGAGGCAGCAGCTGCACAAAAAGAAGCCAAGACTGCATCGTCGAAGTTGTCAGCAACGGCACAAGCTTCAATGCATATTGAGGATAAGTATAGGTTCATGGTCGCTGCCTCAAATCTGAAGAGGGAGGGTGCAGCAGACAGTGCTTGGGACGATTGA 1674 0.451 MSYVPPHLRNSSSTSVATRTLSSLTLDNHDPSTAKLSSLSNSHLNNTSAASLSNGSRRSSATHTVPDPVFPHWTPSERVSRMSPEQIEEVRLRLNVDVTVASGSLPAPAPIESFTDMCLHPSIMKDITIHEYSRPTPIQAQAVPVALSGRDLLGCAETGSGKTAAFTIPMIQHCLSQSPIRRGDGPLALVLAPTRELAQQIEKEVKAFSQSLESFKTALVVGGTNIVEQRSELRAGVDIVVATPGRFIDHLQQRNTSLSRISFIVLDEADRMLDMGFEPQIREVMRSLPDKHQTLLFSATMPVEIEELAQEYLTKPVRVKVGKVSSPTANVSQTLLKVSESEKIDRLLALLVEESSDAEKCGHPFPLTIVFVERKTKCEEVVEALVAQGLPAVSLHGGRSQTERETALRDFRNGSTSILIATDVASRGLDVTGVAHVINLDLPKTIEDYVHRIGRTGRAGSTGQATSFYTDRDMFLVAHIKKAISDVESGNAGAFATGKAARRKEREAAAAQKEAKTASSKLSATAQASMHIEDKYRFMVAASNLKREGAADSAWDD* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00538 557 CDD DEADc 132 320 - -
Pte8g00538 557 Gene3D - 72 323 IPR027417 -
Pte8g00538 557 Pfam Helicase conserved C-terminal domain 343 460 IPR001650 -
Pte8g00538 557 FunFam probable ATP-dependent RNA helicase DDX17 72 322 - -
Pte8g00538 557 MobiDBLite consensus disorder prediction 497 526 - -
Pte8g00538 557 SMART helicmild6 379 460 IPR001650 -
Pte8g00538 557 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 265 273 IPR000629 -
Pte8g00538 557 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 503 IPR001650 -
Pte8g00538 557 Gene3D - 325 521 IPR027417 -
Pte8g00538 557 SMART ultradead3 131 334 IPR014001 -
Pte8g00538 557 MobiDBLite consensus disorder prediction 25 63 - -
Pte8g00538 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 480 IPR027417 -
Pte8g00538 557 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 112 140 IPR014014 GO:0003724
Pte8g00538 557 CDD SF2_C_DEAD 331 469 - -
Pte8g00538 557 Coils Coil 501 521 - -
Pte8g00538 557 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 107 509 - -
Pte8g00538 557 MobiDBLite consensus disorder prediction 25 82 - -
Pte8g00538 557 Pfam DEAD/DEAH box helicase 136 307 IPR011545 GO:0003676|GO:0005524
Pte8g00538 557 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 319 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00538 Pte-Chr8 26164849 26174101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00538 112 482 Eukaryotic Initiation Factors Gene Family AT1G72730 36.658 1.84e-71 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00538 K12823 - qsa:O6P43_020458 859.751