Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00530 ATGGCGGTACAGACTACTGAGACTCTCTCGGAGCTTGTGATCCTCAAGAAGCAAAAGTCTCTGACACTCTCAACTGAAACTGAAACAGAGTATACCTCAGTAGCATGTACACCAAAAAGGAAATCTCAGCTTAAGCTTGTGAGAATCATTATCACTGATGCTGATGCTACTGATTCTTCAAGTGATGAAGACGAAGAAGTCAAAAGAACTGTACGAAGAATGAAGAGACATGTAAAAGAAATCAGCTTGGAGCTTCCTTCTTCAAACTCTGTTACTCCTTCCTCCTCCACTTTAACTACTGGTTCTTCGGTTCAGCAGCAAAAGAAGCCTAAGAGGAGTCCGGTTAGTTCTAGCAGTGTAAAACTCTCTCGGTGTCACAAGTTCAGAGGCGTCCGGCAAAGACCGTGGGGAAGATGGGCTGCAGAGATCCGGGACCCGACTAGACGCAAGCGGGTCTGGCTTGGAACCTTTGATACGGCGGAAGAAGCTGCCATCGTGTACGACCAAGCAGCGCTGAAACTCAAAGGTCCAAACGCCATCACGAACTTTCCTAACGCCGTACTGTCGGAGACTCTTACAGTTGACACTGTCAGTGCGGAATCTTCTGCTACTTCTGAAGCTGGCGTGGCCGCCTCTTCACCAACGTCGGTCCTCCGATACGACGATGGGTCGACGCCGTTTGATGGGTTGGGTTACGGTAACGTCGACGCCTTCGGTTTTGGCATCGACTTGCCGTTAAGTTTGCCGGACATGCTTTTCTCTAGTGAGCGTTTTAGCGAAGAGCAGTTTGGCGAGTTTGACCTTGACGAGTTCTTAGTGGACATCGCGTCATGA 834 0.4916 MAVQTTETLSELVILKKQKSLTLSTETETEYTSVACTPKRKSQLKLVRIIITDADATDSSSDEDEEVKRTVRRMKRHVKEISLELPSSNSVTPSSSTLTTGSSVQQQKKPKRSPVSSSSVKLSRCHKFRGVRQRPWGRWAAEIRDPTRRKRVWLGTFDTAEEAAIVYDQAALKLKGPNAITNFPNAVLSETLTVDTVSAESSATSEAGVAASSPTSVLRYDDGSTPFDGLGYGNVDAFGFGIDLPLSLPDMLFSSERFSEEQFGEFDLDEFLVDIAS* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00530 277 Gene3D AP2/ERF domain 126 186 IPR036955 GO:0003700|GO:0006355
Pte8g00530 277 ProSiteProfiles AP2/ERF domain profile. 127 184 IPR001471 GO:0003700|GO:0006355
Pte8g00530 277 Pfam AP2 domain 127 176 IPR001471 GO:0003700|GO:0006355
Pte8g00530 277 FunFam Ethylene-responsive transcription factor 2 126 185 - -
Pte8g00530 277 CDD AP2 127 186 IPR001471 GO:0003700|GO:0006355
Pte8g00530 277 PRINTS Ethylene responsive element binding protein signature 128 139 IPR001471 GO:0003700|GO:0006355
Pte8g00530 277 PRINTS Ethylene responsive element binding protein signature 150 166 IPR001471 GO:0003700|GO:0006355
Pte8g00530 277 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 45 219 - -
Pte8g00530 277 MobiDBLite consensus disorder prediction 85 119 - -
Pte8g00530 277 SMART rav1_2 127 190 IPR001471 GO:0003700|GO:0006355
Pte8g00530 277 SUPERFAMILY DNA-binding domain 127 185 IPR016177 GO:0003677
Pte8g00530 277 PIRSF PTI6 16 276 IPR017392 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00530 Pte-Chr8 25645890 25647876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00530 45 220 AP2-EREBP Transcription Factor Family AT4G27950 50.000 4.67e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte8g00530 AP2 6.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00530 K13434 - qsa:O6P43_020468 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte8g00530 8 25645890 25647876 Pte8g00530 8 25645890 25647876 RCT