Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00486 ATGGGGAGAAGACCTGCCAGGTGTTATCGTCAAATAAAGAACAAGCCATACCCAAAGTCACGATACTGTCGTGGTGTGCCTGACCCGAAGATCAGGATTTATGATGTGGGTATGAAGAAGAAGGGGGTTGATGAGTTCCCATTCTGTGTGCATTTAGTCTCCTGGGAGAAGGAGAATGTTTCAAGCGAAGCTCTCGAGGCTGCCCGTATTGCATGCAACAAGTACATGGCTAAGTTTGCTGGAAAGGATGCTTTCCATTTGCGTGTGAGGGTTCATCCTTTCCATGTACTTCGAATCAACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAAACTGGAATGAGGGGTGCTTTTGGAAAACCACAGGGTACTTGTGCCAGAGTTGACATTGGTCAAGTCCTTCTTTCTGTTCGTTGCAAGGACAGCAACAGTCATCACGCTCAGGAGGCCCTTCGCCGTGCTAAGTTCAAGTTCCCTGGTCGCCAGAAGATCATTGTCAGCAGGAAATGGGGATTCACCAAATTCAACCGCACTGATTATTTGAAGTTGAAACAAGAGAACCGAATTGTTCCTGATGGTGTCAATGCGAAGGTATTTCTGTGA 606 0.4703 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRTDYLKLKQENRIVPDGVNAKVFL* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00486 201 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Pte8g00486 201 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Pte8g00486 201 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Pte8g00486 201 FunFam 60S ribosomal protein L10 1 199 - -
Pte8g00486 201 Gene3D Ribosomal protein L10e/L16 1 201 IPR036920 GO:0003735|GO:0005840|GO:0006412
Pte8g00486 201 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Pte8g00486 201 PANTHER 60S RIBOSOMAL PROTEIN L10 1 199 IPR001197 GO:0003735|GO:0005840|GO:0006412
Pte8g00486 201 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Pte8g00486 201 NCBIfam 50S ribosomal protein L16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00486 Pte-Chr8 23072022 23073921 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00486 1 200 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 89.500 4.72e-134 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00486 K02866 - pvy:116105818 404.445