Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00426 ATGTTAAGCCCACCCGCCTTGTCAAATTATCAGCACAAGAACTCGGTGAATCAAATAATGGAGAGCATATTCTCTTACAACAGTAACATCATGTTGGCTGCTATTGTTTCTTTGCTGCTGGTCATTTTGTTTGTGCTGATTCTTCACATTTATGCGAAGTGGTTTCTTGCACAAGCTCAAACTCAGGCACGGCGTCGTCGTCGACGGGCTTCTGTGACAGTCACTCACGTGCTTGGCCCTGCCCGGTTTCAACATTTTCATGCATTCAGTTTTGAAGATTCGCCCTTGTCGAATTTTGTGAACAAAGGACTGGATGCGAAATCCATTGCTGCCATTCCTCTGTTCGTGTTTGATGTCCAGGAGAGAAAATTGATTGGGGTCCATGATGATGATAAGACAGACAATGTTAGTTTGGAATGTGTGGTTTGTTTGAGTGCTTTTGAAGATGGTGACATCGGTCGGACATTACCCAAGTGTGGGCATGCTTTTCATATTGACTGCATTGACATGTGGTTGCATTCACATTCCAGTTGTCCAATCTGCAGAGCTCCAATAATGGTGGGTGGCAATGCTGAGAGTGAAACCCAATTGGGTTTCGCTCATGAGAATGATCCCTCTGCTTTGATTGACATTGTCACGGATACTGAGATTCTTGAGCAAAGAAATGAGACCATTAGTATCGACAACAACATTGTAACCAATGGTTCTGTTGAGGGCAATTCTTATTTTCTGCTAGGATGTTCTTTGCAGAGGATGCTGAGTAAAGTTTTCCCATCTTCCATTGTTAATGAATCAAATGCTTGA 804 0.4303 MLSPPALSNYQHKNSVNQIMESIFSYNSNIMLAAIVSLLLVILFVLILHIYAKWFLAQAQTQARRRRRRASVTVTHVLGPARFQHFHAFSFEDSPLSNFVNKGLDAKSIAAIPLFVFDVQERKLIGVHDDDKTDNVSLECVVCLSAFEDGDIGRTLPKCGHAFHIDCIDMWLHSHSSCPICRAPIMVGGNAESETQLGFAHENDPSALIDIVTDTEILEQRNETISIDNNIVTNGSVEGNSYFLLGCSLQRMLSKVFPSSIVNESNA* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00426 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 204 - -
Pte8g00426 267 Pfam Ring finger domain 139 182 IPR001841 -
Pte8g00426 267 SMART FANCL_C_2 136 190 - -
Pte8g00426 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 187 IPR013083 -
Pte8g00426 267 CDD RING-H2_EL5-like 139 182 - -
Pte8g00426 267 SMART ring_2 140 181 IPR001841 -
Pte8g00426 267 SUPERFAMILY RING/U-box 130 187 - -
Pte8g00426 267 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00426 Pte-Chr8 17020949 17021759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00426 24 220 Rapid Response to Elicitors AT3G16720 33.663 5.06e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00426 - - qsa:O6P43_014072 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte8g00426 8 17020949 17021759 Pte8g00426 8 17020949 17021759 RCT