Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00423 ATGTCGCAGGTAAGGAGTATGGAAGAGGGATTTTTAGGCTCATGGCATCCAGGTATTGTCACTGCTTGTGGACCCCGGAAGCGTTATGTTAGATATGACAATATTTTAGATGATAAGGCCTCAGATAATCTTATTGAAGAGGTGAGCGTTTCAGCTATTCTGGATGGAAGTAATTGGCTGAAAGGGCAAAGGCGCAATAAATGTGGGAGTATTAGGCCTATCCCTCCATTATTGACTTTTGTAAACACAGACTTTCCTTATGGTCTCTGTGTTGATGTGTACTATGACGAGGCTTGGTGGGAAGGTGTAATTTTTGATCATCAAAATGGTGATGATCAGAGAGTCATATTTTTCCCTGAGTTGGGCGATGAGGTAAAGGCAGAGATTAGCCAATTACGTATTACTCAAGACTGGAATGAGGCCACAGAGACTTGGCAGCAACGCGGAAAGTGGATATTTCTTGAATTGATTAAAGAATTTGAGCAAGAGTCTTTTATTGCTGTTTCAGTGAAGCAAATCTGGTATGATCTAAGGGCTAAAGATGCTTTTGTTAAAGTTGGTGACTGGACTCTTAATAGCAAGGAACTGTGGGAGCCTTTAGTGTTTGAGGTCATTGATGAGTACATCGAGGTTACTTTAAATGAAGTATATTCAATTCTAGAATTTTCAAATGACTTCTCCAAAGATACGCCTGAGCTAGGAGAAGATAAAACCAATGATATCGACATCCTCCCCAAAGTGACTCTGTCTACCATTGAAGCTAACATTGCTATAGATACCCCTAGGAATAGCAAATTAGAATTTCATCTTGATACCACTATTAATCATGCATTCACTTATGCTGAGGTTGGAGTTGCTGAAAGCTTGCTTGAAAAAATGGACATGGCAATTGTATCAGTGAATAGTAATCAAAATACTACTGAGATTCCTCCACTTAAAGAGGACTGTACTGATCATCAACAAGCTGGAATTTCAAGCATATATAACAACACTGACTCAGGTGCATCCGTCCCAGAGAGTGCTATGTTAGCACAAAAGGAATCTGGGGAACCAACTCAAGAAATACCTTTCTTTTCCGACAGAGGTACCCCGCGCATTACATCTGTTGTCACTGAAGGAAAAATTGACGGGAATGGTTCAGATAGAAACAATGGACAGCCTGCTGGTATTTCTCGCACAATGAGCCATTGGGAACCTATATCTCTTCCTGAGGGTGTATCCTGTCTGAGTGCTGTTCAAAATTACGAGAGAGCATCCACCAGAAATGATAGGAAAAATTATAAACCTGAAGTCCTTAAACATCTCTCATACCATGGGTGGAAAATGGAATCGTGTCAATATAATAGGCTAATAGTTCGTTATGTCTCACCTGATGGGAAGTATTATAGCTCACTGCGTATAGTATGCTCAGCCATAATACAACATGAGAAAATAATGGATTCTGAATTATCCCTGGATGACCGGGAAAGTTTGAACTCTGCACCTGATGATAGATTTTCAGACATAACGATGTTGAAACCAGAAAAGAAACAGGAATCTGAGTGTAGCCCAAAAGACGGTCAACCTTGTTCTCCTAGTTCGGTGCTTGATCCGGAACTTTGTCCTGAGGCTCTTTGGGAGTACGCTTTGCATGCAAGGGATAAAGGCTTGAAGACTACCAAAAGGATGAGACTGAAAGCTCAGAAGCACCTCTTAGCAGTAGGCTGGGAATTTCGTTACTACACATTTAGAAGAACTAGGCAAATTCGATGCATCTCACCAAGCGGACATACATTCACGTCTCTTCTAAAAGCTTGTGAGGTTGTAACGAGCATTTCTGGACACTCATGTATCAGCAAGGCAAATGAGAATCAAATTAAAAATGATAAGTTATCATCTGCAAGAAGTGATGGATCATCTGACAAGTATGCGAGAATGTGTTCTACCTTGCCCCAATCACTAACACTTTCAGATCCAAATGAATCACATCAATTGAAGAAACAGAATGTGAGCAAGGTAAATCGGAAGAGAAAAGGATTGTCCCGGAAAGGGAGAGAAAAAGAAGGTAGACGTCAGAAGCGCATATTGCAATCAAGTAAGAGGGTACAACAAGTGTTTCTGCCGTGTTCTTCACACATAAAACCTCAAAATGTTTTGTCTTGGCTTATAGAAAATAATGTACTGTTTCGAAGGGACAAGGTATCTTATCGTGTTAATAAAACCAGCTGTTCGAAGCTTGCCGAGGGGATTGTAATGCATGAGGGAATCAAGTGCAACTGTTGTCAGGCGATATTTAGTGTTAGTCGCTTTGCAAACCATGCTACTGGAAGCAGTCACGGCAGTCCATCTGCTCATATCTTCCTCGAAGATGGTAGGTCTCTGTTAGAATGCCAGATGCAAATGAGGAATGGTTCTAGTTTGAGAACTTCCATTGGAGAGTCTAACGATGAGCTGAAAGACAATCAGCATGTGACTGAGAATGATCATATCTGTTCAGTTTGCCATTATGGTGGTGAACTAATTCTATGTGATCAATGCCCGTCCTCATTCCACAAAGACTGTGTCCATTTGAAGGACATCCCTGATGGTGACTGGTTTTGTCCATCATGTTGCTGCAAGATTTGTGGGAAGAGCAATTTCAAAGATGATAAAGATAACCATTTTCTTAGTTGCAGTCAATGCGAACAGAAGTATCATGTTAGTTGCCTGAAGAAAAATGGTGTAAATAAGATAATAGAACAGATTTGGTTTTGCTGTAACAACTGTGAGAAGATATATTTGGGCCTCCGTAGAATTTTGGGGAAACCAATTTCAGTGGGTGTCGATGGTCTTACTTGGACATTAATGAAGCATTTGAACCCAGACACTTATGGTCTTCATTGCCGTGGTACCGATTATTCGGCTGAGAGCTATTGCAAGCTCAATGTTGCTCTTGGAGTGATGCATGAATGTTTTGAGCCTGTCAAGGACTCATTTACAGGAAGAGATCTCGTGGAAGATGTCATTTTCAGTAGATGGTCAGGGCTTAAACGGTTGAATTTTGAAGGCTTCTATACTATACTTCTGGAAAGAAATGAGGAATTAGTTTCTGTGGCTACAGTAAGGGTCTACGGAGAGAAAGTTGCTGAGATACCCCTTGTTGGGACTAGAGTTCATTATCGTCGCCTTGGAATGTGCAGAATATTAATGAATCAGCTTGAAAAGAAGCTGATGGAACTTGGAGTAGAGAGTCTGGTTTTACCTGCTGTTCCTTGTGTGCTGAACACGTGGACTTTCGCATTTGGTTTCTCAAGCATGACAAATTCCCAGAAATCACAGTTTCTGGATTATACATTCCTTGATTTTCAAGACACTGTCTTGTGCCAGAAGCTATTGAAGGATCCATCAGTGAAACCGATTATATTTGAAGAAATTGTTCCAAATTCTTGTGATAGCGTCGAAGGTGAAGGATTCAGTCCCGCATCTGAAGTATCTGAAACTGAAGATATTGACAAGAGTGAAACAGAAAGGCCAAAGGATGTCTGGCCCTTCACTACTTTAGACTCTAAATACGGACACATGTTTAAGATGCATGGACAATCAAATTTATGCTGA 3573 0.4075 MSQVRSMEEGFLGSWHPGIVTACGPRKRYVRYDNILDDKASDNLIEEVSVSAILDGSNWLKGQRRNKCGSIRPIPPLLTFVNTDFPYGLCVDVYYDEAWWEGVIFDHQNGDDQRVIFFPELGDEVKAEISQLRITQDWNEATETWQQRGKWIFLELIKEFEQESFIAVSVKQIWYDLRAKDAFVKVGDWTLNSKELWEPLVFEVIDEYIEVTLNEVYSILEFSNDFSKDTPELGEDKTNDIDILPKVTLSTIEANIAIDTPRNSKLEFHLDTTINHAFTYAEVGVAESLLEKMDMAIVSVNSNQNTTEIPPLKEDCTDHQQAGISSIYNNTDSGASVPESAMLAQKESGEPTQEIPFFSDRGTPRITSVVTEGKIDGNGSDRNNGQPAGISRTMSHWEPISLPEGVSCLSAVQNYERASTRNDRKNYKPEVLKHLSYHGWKMESCQYNRLIVRYVSPDGKYYSSLRIVCSAIIQHEKIMDSELSLDDRESLNSAPDDRFSDITMLKPEKKQESECSPKDGQPCSPSSVLDPELCPEALWEYALHARDKGLKTTKRMRLKAQKHLLAVGWEFRYYTFRRTRQIRCISPSGHTFTSLLKACEVVTSISGHSCISKANENQIKNDKLSSARSDGSSDKYARMCSTLPQSLTLSDPNESHQLKKQNVSKVNRKRKGLSRKGREKEGRRQKRILQSSKRVQQVFLPCSSHIKPQNVLSWLIENNVLFRRDKVSYRVNKTSCSKLAEGIVMHEGIKCNCCQAIFSVSRFANHATGSSHGSPSAHIFLEDGRSLLECQMQMRNGSSLRTSIGESNDELKDNQHVTENDHICSVCHYGGELILCDQCPSSFHKDCVHLKDIPDGDWFCPSCCCKICGKSNFKDDKDNHFLSCSQCEQKYHVSCLKKNGVNKIIEQIWFCCNNCEKIYLGLRRILGKPISVGVDGLTWTLMKHLNPDTYGLHCRGTDYSAESYCKLNVALGVMHECFEPVKDSFTGRDLVEDVIFSRWSGLKRLNFEGFYTILLERNEELVSVATVRVYGEKVAEIPLVGTRVHYRRLGMCRILMNQLEKKLMELGVESLVLPAVPCVLNTWTFAFGFSSMTNSQKSQFLDYTFLDFQDTVLCQKLLKDPSVKPIIFEEIVPNSCDSVEGEGFSPASEVSETEDIDKSETERPKDVWPFTTLDSKYGHMFKMHGQSNLC* 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00423 1190 SMART agenet_At_2 83 140 IPR014002 -
Pte8g00423 1190 PANTHER PHD FINGER PROTEIN 12 543 1154 IPR042163 GO:0003714|GO:0045892
Pte8g00423 1190 SUPERFAMILY FYVE/PHD zinc finger 811 868 IPR011011 -
Pte8g00423 1190 MobiDBLite consensus disorder prediction 662 682 - -
Pte8g00423 1190 Pfam Agenet domain 4 76 IPR008395 -
Pte8g00423 1190 Pfam PHD-finger 823 865 IPR019787 -
Pte8g00423 1190 CDD PHD2_CHD_II 824 863 - -
Pte8g00423 1190 Pfam Tify domain binding domain 742 794 IPR032308 -
Pte8g00423 1190 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 957 1119 IPR000182 GO:0016747
Pte8g00423 1190 MobiDBLite consensus disorder prediction 1140 1163 - -
Pte8g00423 1190 ProSiteProfiles Zinc finger PHD-type profile. 821 866 IPR019787 -
Pte8g00423 1190 CDD NAT_SF 1013 1073 - -
Pte8g00423 1190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 814 864 IPR013083 -
Pte8g00423 1190 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1008 1077 IPR016181 -
Pte8g00423 1190 ProSiteProfiles Zinc finger PHD-type profile. 862 918 IPR019787 -
Pte8g00423 1190 CDD PHD_SF 864 915 - -
Pte8g00423 1190 MobiDBLite consensus disorder prediction 651 688 - -
Pte8g00423 1190 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Pte8g00423 1190 SMART PHD_3 823 864 IPR001965 -
Pte8g00423 1190 SMART PHD_3 865 916 IPR001965 -
Pte8g00423 1190 Gene3D - 992 1087 - -
Pte8g00423 1190 CDD Tudor_Agenet_AtDUF_rpt1_3 4 76 - -
Pte8g00423 1190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 865 918 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00423 Pte-Chr8 16902773 16909131 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00423 5 246 PHD Transcription Factor Family AT5G58610 44.622 7.05e-66 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte8g00423 Agenet 2.3e-12 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00423 - - pcin:129318355 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte8g00423 8 16902773 16909131 Pte8g00423 8 16902773 16909131 RCT