Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00414 ATGGAGAAGCATAAGTGTAAGCTTTGCTTCAGGAACTTCTCTAATGGCAAAGCTTTAGGGGGTCACATGAGGTCTCATATGATGAACCTTCCGATTCCTCCAAAACCAGAAGATGCACGGCCACCACCACCGCTACAGCCACCACCTGTGGTAGCAGCTAGTCAGGTCAGCGATGAGGTTGAGTCAGCTTCGTACTCATCTGAAGAAGATGGAGAAGGAGAGAAGAGTTTGAGTTATGGTGCGAGAGAGAACCCAAAGAGAAGCATTGGCTTGGTAGATCCTGAGTTTGCATTTGCTGTTGATGCTGGGTCTGTTGTTCTTCAAGATAGAGAGAGCGAAACAGAGTCATCGAAGAACCCAACTCGAAGACGATCCAAAAGGGTTCGAAAATCAGTTGCCATGGCAGAAGATCAGGTCCGACATCAAAACAAGCAAATTCAACTGAACGCCATGAAAAAGTTTCAAACTTTGATGAATCCCAGTAAAAATGAATCGTGGACAGCAGAGCCTGAACCTGCGAGCTCGGTTTCTGATGCGACGACAGAAGAAGATGTTGCATTTTGTCTTATGATGCTGTCTAGAGACAAATGGAAGAGACAAAAGGATCAGGTTGAAGGAGAACAATATCATCACGGTGATAATGATGACGAGCAAGACGACGAACACGAGGACGGAGAAGAAGCAGAAAGATCCTTTGAAGAAAGTGATGAATCCGAGGACATTCTCAAATCGAGAAAGACACGAGTGCGAGGAAAATACAAATGTGAAACATGCAACAAAGTCTTTCGATCTTATCAAGCATTAGGTGGACATAGAGCAAGTCACAAGAAGATGAAGGTTTGTACTAGAATGACTGAACCAGAGTTGCAGCAAGTGAATGCAGGTACTTCAGCAGAGAAGAAAATTCACGAGTGTCCAGTTTGTTTCAGAATTTTCTCATCAGGGCAAGCACTAGGTGGGCATAAGAGAACTCATGTCATTGGTGCTTCAGCAAGTACACCAGCGAGGAACTCTACTAAGTTTTGGGACAATACGATAGATCTTAACCTTCCTGCTCCAGTTGATGATGATATTAGCCAGATTGAAGTTTCTGCAGTGTCTGATGCAGAATTCGTCAACTCCACTAGGCCATGA 1134 0.4436 MEKHKCKLCFRNFSNGKALGGHMRSHMMNLPIPPKPEDARPPPPLQPPPVVAASQVSDEVESASYSSEEDGEGEKSLSYGARENPKRSIGLVDPEFAFAVDAGSVVLQDRESETESSKNPTRRRSKRVRKSVAMAEDQVRHQNKQIQLNAMKKFQTLMNPSKNESWTAEPEPASSVSDATTEEDVAFCLMMLSRDKWKRQKDQVEGEQYHHGDNDDEQDDEHEDGEEAERSFEESDESEDILKSRKTRVRGKYKCETCNKVFRSYQALGGHRASHKKMKVCTRMTEPELQQVNAGTSAEKKIHECPVCFRIFSSGQALGGHKRTHVIGASASTPARNSTKFWDNTIDLNLPAPVDDDISQIEVSAVSDAEFVNSTRP* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00414 377 MobiDBLite consensus disorder prediction 199 243 - -
Pte8g00414 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 253 280 IPR013087 -
Pte8g00414 377 MobiDBLite consensus disorder prediction 217 235 - -
Pte8g00414 377 MobiDBLite consensus disorder prediction 20 85 - -
Pte8g00414 377 MobiDBLite consensus disorder prediction 199 216 - -
Pte8g00414 377 Gene3D Classic Zinc Finger 250 325 - -
Pte8g00414 377 ProSitePatterns Zinc finger C2H2 type domain signature. 255 275 IPR013087 -
Pte8g00414 377 SMART c2h2final6 303 325 IPR013087 -
Pte8g00414 377 SMART c2h2final6 253 275 IPR013087 -
Pte8g00414 377 SMART c2h2final6 4 26 IPR013087 -
Pte8g00414 377 MobiDBLite consensus disorder prediction 34 50 - -
Pte8g00414 377 Pfam C2H2-type zinc finger 253 277 - -
Pte8g00414 377 Pfam C2H2-type zinc finger 4 27 - -
Pte8g00414 377 Pfam C2H2-type zinc finger 303 325 - -
Pte8g00414 377 MobiDBLite consensus disorder prediction 108 138 - -
Pte8g00414 377 SUPERFAMILY beta-beta-alpha zinc fingers 253 325 IPR036236 -
Pte8g00414 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Pte8g00414 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 303 325 IPR013087 -
Pte8g00414 377 MobiDBLite consensus disorder prediction 160 179 - -
Pte8g00414 377 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Pte8g00414 377 ProSitePatterns Zinc finger C2H2 type domain signature. 305 325 IPR013087 -
Pte8g00414 377 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 374 IPR044303 GO:0006355
Pte8g00414 377 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00414 Pte-Chr8 15619250 15620460 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00414 1 366 C2H2 Transcription Factor Family AT3G60580 41.979 8.81e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte8g00414 zf-C2H2_6 3.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00414 - - qsa:O6P43_017371 429.869