Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00413 ATGGCTTTGATTGTAGATCAACAATCACATTTCAAGCACTTCTGTAAGATTTGCAAGAAAGGTTTCCTTTGCGGAAGAGCACTAGGAGGGCACATGAGGGCACATGGAATAGGTGATGCTGACAGTGCTACCATTGATGATGATGACCAAGCTAGTGATTGGGAAGACAAAATAGGTGGGGATGTGCCTTCAAGCAAAAAGCGAATGTACGCATTAAGAACAAACCCTAATCGCTTGAAGAGTTGCCGTGTTTGTGAAAACTGCGGCAAAGAATTCTCGTCCTGGAAATCTTTTCTTGAACATGGGAAATGTAGCTCCGAGGATGCTGAATCCCTTGTCTCATCTCCTGCTGGTTCTGATGGTGACATTGGGATTTGTCCTAGAGCTTGTGGTTGGTCTAAAAGAAAACGATCATTTAGAGCTCAAGTAGGTCATTTCAATTCAAACTGTCCATCAAGTGAGGAAGAAGACCTCGCAGCAAATTGCCTTATGATGTTATCAAATGCAGCAGCAGTTGATCGGAACCCTACGATGACCGAGCCCGAAGAGTCGTGCGCTTCAGCTAGTAAAGATGAAGAGAGACGAAACCCCTTGAATTTCATATCTTCATTTTCCTGTAAAATTCCAATAGATTATAACAAAGCCAAAGGTGTTTCAAAAGCTGGAATGTTTGAATGCAAAGCATGCAAGAAAGTTTTCAATTCCCACCAAGCTTTAGGAGGACACCGAGCTAGCCACAAAAAAGTCAAGGGTTGTTTTGCATCGAAGCTTGATCAAATTGAAGATCCTCTTCCCGAAGATGATGTTATCACACATGAAGAATTTTTCCCCACAAGACCAAACTCCACCTTAGGTCATGGTTCAAATGCTCCATACGCATTTACATCCAAAAGAAAATCAAAAGTGCATGAGTGCTCAATTTGTCACCGTGTGTTCTCATCAGGACAAGCGTTAGGAGGTCATAAAAGGTGTCATTGGATCACATCGAATGCACCAGATACATCAACTTTGGCAAGGTTTCACCAATTTCAGGAAAAGTTAGAGCATCTGAGTCAAATACCAAAGTTTGATTCTGATTCACTTGATCTGAACCTGGACCTGAATCTTCCAGCACCGGGTGATCACAAACAAGCAGGAGACAGACGTAAAGTCACCACAGAAATTTATTTACAGTCATGGGGAGAGAAAAAAGAAGCAGATGAAGATGACTACCGCCAAAATGATGATTTAAACAACGAAGACAAAACTAACAAGAAGAACACCAATACTTCGGTGCAAAATGTGGATGATGAAGCAGACAGTACTGTTAAGTTGGCTAAACTAAGTGAGCTGACAGAAATGAACTTAGGTGGGAATTCCACAGCATGGTTGCAAGTAGGAATTAGTTCAAGAGACGATGTGGGAACTGATACATAA 1416 0.4174 MALIVDQQSHFKHFCKICKKGFLCGRALGGHMRAHGIGDADSATIDDDDQASDWEDKIGGDVPSSKKRMYALRTNPNRLKSCRVCENCGKEFSSWKSFLEHGKCSSEDAESLVSSPAGSDGDIGICPRACGWSKRKRSFRAQVGHFNSNCPSSEEEDLAANCLMMLSNAAAVDRNPTMTEPEESCASASKDEERRNPLNFISSFSCKIPIDYNKAKGVSKAGMFECKACKKVFNSHQALGGHRASHKKVKGCFASKLDQIEDPLPEDDVITHEEFFPTRPNSTLGHGSNAPYAFTSKRKSKVHECSICHRVFSSGQALGGHKRCHWITSNAPDTSTLARFHQFQEKLEHLSQIPKFDSDSLDLNLDLNLPAPGDHKQAGDRRKVTTEIYLQSWGEKKEADEDDYRQNDDLNNEDKTNKKNTNTSVQNVDDEADSTVKLAKLSELTEMNLGGNSTAWLQVGISSRDDVGTDT* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00413 471 MobiDBLite consensus disorder prediction 395 416 - -
Pte8g00413 471 ProSitePatterns Zinc finger C2H2 type domain signature. 226 246 IPR013087 -
Pte8g00413 471 Gene3D Classic Zinc Finger 11 104 - -
Pte8g00413 471 SUPERFAMILY beta-beta-alpha zinc fingers 223 325 IPR036236 -
Pte8g00413 471 MobiDBLite consensus disorder prediction 395 433 - -
Pte8g00413 471 PANTHER OS02G0659100 PROTEIN 2 466 - -
Pte8g00413 471 SMART c2h2final6 83 103 IPR013087 -
Pte8g00413 471 SMART c2h2final6 224 246 IPR013087 -
Pte8g00413 471 SMART c2h2final6 303 325 IPR013087 -
Pte8g00413 471 SMART c2h2final6 13 35 IPR013087 -
Pte8g00413 471 SUPERFAMILY beta-beta-alpha zinc fingers 13 102 IPR036236 -
Pte8g00413 471 MobiDBLite consensus disorder prediction 417 431 - -
Pte8g00413 471 ProSitePatterns Zinc finger C2H2 type domain signature. 305 325 IPR013087 -
Pte8g00413 471 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Pte8g00413 471 Gene3D Classic Zinc Finger 221 325 - -
Pte8g00413 471 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 251 IPR013087 -
Pte8g00413 471 Pfam C2H2-type zinc finger 13 35 - -
Pte8g00413 471 Pfam C2H2-type zinc finger 224 248 - -
Pte8g00413 471 Pfam C2H2-type zinc finger 302 327 - -
Pte8g00413 471 ProSiteProfiles Zinc finger C2H2 type domain profile. 303 325 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00413 Pte-Chr8 15605964 15607379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00413 134 365 C2H2 Transcription Factor Family AT1G02040 37.872 6.69e-34 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte8g00413 zf-C2H2_6 1.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00413 - - hbr:110666950 642.114