Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00411 ATGAGTCAGTGTGTTCCCAGCTGGAATCTCGATGATGAGACCTCACCTCCCAAGTTTTACATGCGTTCTCATTCCAATTCTAGATGTCCTGATGTTCCAATGTCTAATTACGAAGTTGCAGAGCTGACATGGGAGAATGGGCAGCTATCCCTTCATGGCTTGGGCCTACCCCGAGTGCCTTGCAAACCGGTGACAGCCGCCGCCGCCACCATTACCGGTACAGTTAGTTCTTGTCCTACCAAGTGCACATGGGACAAGCCCCGTGCAAATGGTACCTTAGAATCCATAGTTAACCAAGCCACTCGGTTACCACACCATGAAAAACGAAGTGGCAGCAAAGCTGATCATGGACTAGTCCAGTGGATTGAAAACCCCAAAGCTGCAGCTACTGCCACAGCTTTAGCGTCCGCCACAATGACCATGGACGCTTTGGTACCTTGCTCAAACCATACCGATGACCTAGGCATTTGCGCAGTGGGGTGCTCCACACATGTGGAGTCTTGCAGTGAAGCTACAACACATGGTGAAGATTATGTCCTCTTGGCATCTAAACGGGCCAAGGTGGCGCGTTTGCCAGTAATGCAAGAGTGGAGTAGCAGAGACCAAAGTGTAAGCACTAGTGACACCTTTGGCATGGACAAGAGTCAGAACATGTCTATGAATACGTATGAAAAGGAACTTGGCAGCTTGGTTTTCACTTCTACCTCTATGGCTTCACCGGAAAACACAAACTCTGGAAAGCAGTGCACCAAGGCAAACACCAGAGATGACCATGATTCCGCCTGTCACAGCAGACCGCAGGAAGAAGAGAAGAAGAAAAACAAAGAAAAATCGTCTGCATCCGCCAAAAGGAGTAGAGCTGCTGCCATACATAATCAATCTGAGAGGAAAAGGAGAGATAAGATAAACCAAAGGATGAAAACATTGCAAAAGCTGGTCCCAAATTCGAACAAGACAGACAAAGCTTCAATGCTGGACGAGGTGATTGAATATCTAAAGCAGTTGCAGGCACATGTGCAGATGATGAGTAGAATGAACATGCCACCCATTATGATGCCAATGACCATGCAACAACAATTTCAAATGTCTTCTATGATGGCTCCGATGGGGATGGCTGGATTAGGTATGGTTACTACGGGGATGGGCATGGGGGGTGTTGATGTCAACAGCAATATTGGCCGTCCTAACATCCCTGCCATCACCCCAATGCTCCACCCAACTCTCTTCATGCCAATGCCCACATGTGATGCCTCTACTGATCATCATCGATTACAAACCCCACCAACGGCTATGGTGCCCGCAGATCCCCTCTGTACCTTTGTTGCATGTCAGCCAATGGCTATGGATCAATACAGCAGGATGGCTGCCATGTACCAGCAATTGCAGCAACCTCTTGCGACCAATTTTAAAAGCTAG 1416 0.4823 MSQCVPSWNLDDETSPPKFYMRSHSNSRCPDVPMSNYEVAELTWENGQLSLHGLGLPRVPCKPVTAAAATITGTVSSCPTKCTWDKPRANGTLESIVNQATRLPHHEKRSGSKADHGLVQWIENPKAAATATALASATMTMDALVPCSNHTDDLGICAVGCSTHVESCSEATTHGEDYVLLASKRAKVARLPVMQEWSSRDQSVSTSDTFGMDKSQNMSMNTYEKELGSLVFTSTSMASPENTNSGKQCTKANTRDDHDSACHSRPQEEEKKKNKEKSSASAKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSNKTDKASMLDEVIEYLKQLQAHVQMMSRMNMPPIMMPMTMQQQFQMSSMMAPMGMAGLGMVTTGMGMGGVDVNSNIGRPNIPAITPMLHPTLFMPMPTCDASTDHHRLQTPPTAMVPADPLCTFVACQPMAMDQYSRMAAMYQQLQQPLATNFKS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00411 471 MobiDBLite consensus disorder prediction 196 216 - -
Pte8g00411 471 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 284 347 IPR036638 GO:0046983
Pte8g00411 471 FunFam transcription factor UNE10 isoform X1 281 346 - -
Pte8g00411 471 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 39 464 IPR031066 -
Pte8g00411 471 Pfam Helix-loop-helix DNA-binding domain 291 336 IPR011598 GO:0046983
Pte8g00411 471 MobiDBLite consensus disorder prediction 236 301 - -
Pte8g00411 471 Coils Coil 292 312 - -
Pte8g00411 471 CDD bHLH_AtPIF_like 290 343 IPR047265 -
Pte8g00411 471 SMART finulus 292 341 IPR011598 GO:0046983
Pte8g00411 471 Gene3D - 281 346 IPR036638 GO:0046983
Pte8g00411 471 MobiDBLite consensus disorder prediction 236 250 - -
Pte8g00411 471 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 286 335 IPR011598 GO:0046983
Pte8g00411 471 MobiDBLite consensus disorder prediction 251 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00411 Pte-Chr8 15595500 15599219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00411 1 452 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 47.300 9.39e-92 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte8g00411 HLH 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00411 - - jcu:105643171 444.121