Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00386 ATGTCAGCACCGCTGCCGCCGTCGACGGCAGATGCTACTGGGGTGGTGGCTGCCATTGGTACCATAAACTATTGCTTCTCAAAGGTCTGTATTTTATCAGAGGATCACCTTTCATTCGAGAATCCACGGAGGTTTTTGGGTTTTGCAAAGAGGCTTCAGCTGGTTATAAACCAGCTTTTCAGATTGTGGCCTTCTCCGTCGGAGGCTCTTCCGACGTCAGTACAGACAGCCCTTAGAGGGATCTCTGGTGATTTAGCTAAGGCTGTAGAGACAATGTGTGTTTATGATAATAGCAGCAGGATATTCGTTTTGATAAATTGTCAGTTGCTTTCCTCTTTGCTTCAAGAACATACTGTAGCCATTGGAGGATGGCTTGCTTTGATAGATTCTTCTCTTCATGACGCACCTGAACTTCGTAAGAAGGCTTCGGATCTTTCCAGGGATATGAAGCTGGCTCAGTTCAGAGTGACAAAGAATGAGGAGAGAGTGCGGTGTATATTGGAGAAAGAAAGGCAAGGAAAACTAACAAGTAAAGCAGTACAGAGTGCCATTGTTTTGGATTTGGCTAGAGCTTTGGGGATCGACCCAGATAATCAAGCTGAGTTAACTGAACAGATAAAGCTGTTTAAGAATGATCTTTCGCGATCTAATTTAGTATCTGAGAAGAAGATATTGGTGTCTTTAGATAGGATTTTAGATAGTTGGTCTGTGGATTCTAGCATTATCACTAGAAAAATGGATTTTGATTTTGAAGATGATGCATCTATGTTGCCTTTCAAGAATTTCCTATGCCCACTTACTAAAGAAGTCATGAAAGATCCTGTCGTGTTGGAGTCCTCTCAAACTTATGAAAGAAGTGCTATTGAGTATTGGTTTGAGGCGTGTATAGAGGACGGTCGAGATCGGACATGTCCAGTTACAGGGCAGATTATTGAGTCATTGGAGTTGAAACCCAATGTCGGGTTGGCAGGGGCAATTGAAGAGTGGGCTAATAGGATAACTGATTATCAGGTCAAATCTGCCGTGCAGCATCTGAGTGAAGAACCACAACCACTGTCAGTTGATGCCATTGAAAAGGTTTTGGATGACATTTGTAAGATTTCAGAAGAGAATCCGATTAGCAGACATAAAATAAGGAATGCTGGCATTGTGCTGCTGATTGTGAAGGTCCTTAGAAACAACTCGAAGATTGTTGGAACACTTTTGAGAAGCAAAGCACTCTTGGCTTTACATAGTATGTCCAAAGATGAAGAAAGTAGGGACATAATGATTGAAGAGGGTATCGCAAGACTGGCCATACATAGCCTTATTGGAAGGTCCGAAAAAGAGAGAGAGTATGCTGTGAAGTTATTAATGGAATTATCAAAGGATGAAGCTTCTTGTGCAAGAGTTGCATCTGAGAAAGGGTCACTAGTTCTTCTGTCAAGCATGGCTGAGAACCTGGATTATCCAGTGTTATCCAATTTAGCAGAAGGACTCCTAAAACAGATGGAGAGAGTAGAGAGCAATGTCCAACTTCTGGCAGCAGCTGGAAGATTTGATCCCTTGCTTACTCGGTTATGTGAAGCAGGCTCTGATAGTGTTAAAATAAAGATGGCATCTTTGGTGGGAAGTATGACTTTGACAAATAGCAGTAAAGAGGAAATTGCCCGTCAAAGTGCTAAAGTACTTGTTGACTTGTTGTCTAAGCAGGAGGGGAGGGCACCAAGTTTGCAAGCTTTATCTAATTTATCAGCATTGGTTGACAATGCATCCATACTTGTTGATTCTGATGTACTGCCATCTCTCATTAGCATTCTCTTTGAGAATGGGGATCCTTCATCAGAGTTGAAGGAATTGGCTGCATCAACAATTGCAAACATCGTGTCAAAGCCAGGTTGCTGGGAGTTGGCATTTGTAGATAAGAAAGGGCATTCAATGCAGTCTGATACTATTATACACAGACTTGTAGAATTGCTAAGGATTACTTCTCTTGGTTGTCAAGCATCTGTACTACAAATTCTATGTGGACTTACATCGTCTCCGCAGGCATCAGAGTCAGTTTGTTCGATTATCAAGTCAGGAGATGGTCTCAATGTAATTTTAACATTTCTTGAATGCCAAGATCTTGAGCACAGAGTCTATGCTTATAAGCTAGCAAGAGTACTCTCTGGATGGTTTGGTCAGGATCTTGGAAATGCTCTGAGAATTGCAGATAAACTTGCCTTAATAAAGGCAAAACTCTTAGACAACAACTCTTCAGATACAGAGAGATCGGATGCCGCATGTATTATTGCTAATGTTCACCTCTCTGAATCTGAAGTTAAGACACTACTCGGACCTTATTTCATGGGATGGGTTGTCACCACTCTCAAGAATCAGCAATGTGAGAGAATTTCGCGGACTGAGTCAGGCATGGTGGACGGGCTATTAGGCCTCCTACTCCACTTCACGCGTACCCTTGATCATCAAACTCTTGGTGCAGTAAAAGAGCATCGTCTTATGACTGTTTTCTGTGAGCAACTTAACTTTTCTTCCAAGGCTAGGGTGAAAAGGCTTGCTGCCATTGGATTGAAAAACTTGTCAGAATTTGCAAGGTCATTCGCTAATGGAGAACGTGAACACCAACCTCCTTATGGGTTCTTCTCCTTTTTGACATTCATGTGTGGGAGGACTTCCAATCGACATCCAACATGTTCTGTGCACAACTGTTTATGTGATGAAGTGGGTCAACTGTGCTTGGTTAAATGCAACTGTATTAGGCCCTTGGTATATCTTCTATCCGATGATGACACTGACGTTCAGATTGCTGCAGTGGAAGCACTCTCAACACTCATTTTGGATAGTGCAACCAGTTTTAGGAGAGCCATTGATGAGTTAGAAGCGCTAGGTGTAGTAGATGTTGTCATCACTGTTTTTACAGAAGCACAATCTGCAGAACTTCAAGAGAAAGCAATTTGGATGATTGAGAAGATTCTGAGAGAAGAAAATCATGCTCACCGTCACTCACTCAATCAATCCCTTGTTAGAGGATTGGTAGAAGCCTTCAAGCATGGGAATGCCAATACCAGGAAGCATGCTCAAGATGCTCTTACCAACCTGAAGCAAATTTCAGGTGTTAGTGGAAAAGCATCAACTCAGTTTCGAGGTGGAAGATAG 3138 0.4226 MSAPLPPSTADATGVVAAIGTINYCFSKVCILSEDHLSFENPRRFLGFAKRLQLVINQLFRLWPSPSEALPTSVQTALRGISGDLAKAVETMCVYDNSSRIFVLINCQLLSSLLQEHTVAIGGWLALIDSSLHDAPELRKKASDLSRDMKLAQFRVTKNEERVRCILEKERQGKLTSKAVQSAIVLDLARALGIDPDNQAELTEQIKLFKNDLSRSNLVSEKKILVSLDRILDSWSVDSSIITRKMDFDFEDDASMLPFKNFLCPLTKEVMKDPVVLESSQTYERSAIEYWFEACIEDGRDRTCPVTGQIIESLELKPNVGLAGAIEEWANRITDYQVKSAVQHLSEEPQPLSVDAIEKVLDDICKISEENPISRHKIRNAGIVLLIVKVLRNNSKIVGTLLRSKALLALHSMSKDEESRDIMIEEGIARLAIHSLIGRSEKEREYAVKLLMELSKDEASCARVASEKGSLVLLSSMAENLDYPVLSNLAEGLLKQMERVESNVQLLAAAGRFDPLLTRLCEAGSDSVKIKMASLVGSMTLTNSSKEEIARQSAKVLVDLLSKQEGRAPSLQALSNLSALVDNASILVDSDVLPSLISILFENGDPSSELKELAASTIANIVSKPGCWELAFVDKKGHSMQSDTIIHRLVELLRITSLGCQASVLQILCGLTSSPQASESVCSIIKSGDGLNVILTFLECQDLEHRVYAYKLARVLSGWFGQDLGNALRIADKLALIKAKLLDNNSSDTERSDAACIIANVHLSESEVKTLLGPYFMGWVVTTLKNQQCERISRTESGMVDGLLGLLLHFTRTLDHQTLGAVKEHRLMTVFCEQLNFSSKARVKRLAAIGLKNLSEFARSFANGEREHQPPYGFFSFLTFMCGRTSNRHPTCSVHNCLCDEVGQLCLVKCNCIRPLVYLLSDDDTDVQIAAVEALSTLILDSATSFRRAIDELEALGVVDVVITVFTEAQSAELQEKAIWMIEKILREENHAHRHSLNQSLVRGLVEAFKHGNANTRKHAQDALTNLKQISGVSGKASTQFRGGR* 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00386 1045 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 331 IPR013083 -
Pte8g00386 1045 ProSiteProfiles U-box domain profile. 257 336 IPR003613 GO:0004842|GO:0016567
Pte8g00386 1045 Gene3D - 332 859 IPR011989 -
Pte8g00386 1045 SMART Ubox_2 261 329 IPR003613 GO:0004842|GO:0016567
Pte8g00386 1045 Pfam Armadillo/beta-catenin-like repeat 905 937 IPR000225 GO:0005515
Pte8g00386 1045 SMART arm_5 371 415 IPR000225 GO:0005515
Pte8g00386 1045 SMART arm_5 580 623 IPR000225 GO:0005515
Pte8g00386 1045 SMART arm_5 946 987 IPR000225 GO:0005515
Pte8g00386 1045 SMART arm_5 416 456 IPR000225 GO:0005515
Pte8g00386 1045 SMART arm_5 815 856 IPR000225 GO:0005515
Pte8g00386 1045 SMART arm_5 542 579 IPR000225 GO:0005515
Pte8g00386 1045 SMART arm_5 899 940 IPR000225 GO:0005515
Pte8g00386 1045 SUPERFAMILY RING/U-box 258 332 - -
Pte8g00386 1045 Coils Coil 490 510 - -
Pte8g00386 1045 SUPERFAMILY ARM repeat 640 1029 IPR016024 -
Pte8g00386 1045 CDD RING-Ubox_PUB 262 316 IPR045210 -
Pte8g00386 1045 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 35 1035 - -
Pte8g00386 1045 Gene3D - 884 1037 IPR011989 -
Pte8g00386 1045 SUPERFAMILY ARM repeat 353 709 IPR016024 -
Pte8g00386 1045 Pfam U-box domain 261 330 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00386 Pte-Chr8 12859707 12864697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00386 259 1035 U-box Gene Family AT1G76390 30.979 1.37e-88 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00386 - - qsu:112031122 1280.77