LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte8g00382	ATGATCATGGCAAAGGCAACTCCATTGTTCCTAGGGACAATTCTCCTCTTCAGTACACTGGCTATGATTGAGGCAAAGAAGAGAGATGATGCTATAGAAGTAACCCACAAGGTCTTCTTTGACATTGAAATTGGTGGAAAAGATGTAGGTAGGTGTCTGTCATATGTAAACGTATGGCAAGTTAATTATACACTCAACTTTCTTAGGTCTGAATTTTCAGGTGAAAAGGACATGGGGAAGCTTGGAAAAGCTCTTCATTACAAGAACAGCACATTCCATAGGATCATTCCCGGCTTCATGATTCAGGGAGGTGATTTTACTCATCGCAATGGAATGGGAGGGGAATCTATCTACGGAGAGAAATTTGCGGATGAAAATTTCGACTTGAAGCACACAGGACCAGGAATATTGTCAATGGCAAATGCTGGAGAGGATACCAATGGATCACAATTCTTCATCACCACTGTCAAAACTGACTGGTTGGATGGTAGACATGTTGTGTTTGGAAAAGTGCTATCAGGGATGCCTGTTGTTTACAGAATTGAGGCCGAAGGAAGGAAAAGTAAGAACACAGTTGTTATTTCTGACAGTGGTGAACTACAACTTTAG	609	0.4138	MIMAKATPLFLGTILLFSTLAMIEAKKRDDAIEVTHKVFFDIEIGGKDVGRCLSYVNVWQVNYTLNFLRSEFSGEKDMGKLGKALHYKNSTFHRIIPGFMIQGGDFTHRNGMGGESIYGEKFADENFDLKHTGPGILSMANAGEDTNGSQFFITTVKTDWLDGRHVVFGKVLSGMPVVYRIEAEGRKSKNTVVISDSGELQL*	203

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte8g00382	202	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	87	104	IPR020892	GO:0003755\|GO:0006457
	Pte8g00382	202	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	39	202	IPR002130	GO:0000413\|GO:0003755
	Pte8g00382	202	Gene3D	-	24	202	IPR029000	-
	Pte8g00382	202	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	135	150	IPR002130	GO:0000413\|GO:0003755
	Pte8g00382	202	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	150	162	IPR002130	GO:0000413\|GO:0003755
	Pte8g00382	202	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	163	178	IPR002130	GO:0000413\|GO:0003755
	Pte8g00382	202	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	92	104	IPR002130	GO:0000413\|GO:0003755
	Pte8g00382	202	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	37	200	-	-
	Pte8g00382	202	PIRSF	Peptidylpro_ismrse	20	201	IPR024936	GO:0003755
	Pte8g00382	202	FunFam	Peptidyl-prolyl cis-trans isomerase CYP19-2	31	200	-	-
	Pte8g00382	202	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	82	194	IPR002130	GO:0000413\|GO:0003755
	Pte8g00382	202	SUPERFAMILY	Cyclophilin-like	33	200	IPR029000	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte8g00382	Pte-Chr8	12671955	12673523	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte8g00382	86	182	U-box Gene Family	AT5G67530	48.980	6.51e-21	88.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte8g00382	K01802		-	gmx:100792140	268.47