Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00341 ATGCAAACTGATAATGGTAAGTTGTTTGTTGGTGGGATATCTTGGGACACAAATGAAGATCGTCTGAAGGAGTACTTCAGTTCATATGGGGAGGTTGTTGAGGCTGTGATTATGAAGGATCGGGCCACAGGTCGAGCGCGTGGCTTTGGCTTTGTTGTTTTTGCAGACCCAAGGTTTGCAGATATAGTCACAAAAGAGAAGCACAACATCGATGGAAGGATGGTTGAGGCGAAGAAGGCTGTTCCTAGGGATGACCAGAATGTACTAAGTAGAAACAGTGGCAGTAGCATCCAAGGCTCTCCTGGTCGCACAAGAAAGATATTTGTTGGAGGTTTAGCATCCTCTGTTACAGAGAATGATTTCAAGAAGTATTTTGATCAGTTTGGGACAATTACCGATGTTGTGGTGATGTATGATCATAACACACAAAGACCAAGAGGTTTTGGGTTTATAACTTATGATTCCGAGGAAGCAGTGGATAAGGTTCTGTATAAGACTTTTCATGAACTGAATGGTAAAATGGTTGAGGTCAAGAGAGCAGTTCCTAAAGAGTCATTACCAGGACCAGGCCGCAGCCCACTTGGTGGATATAACTATGGTCTGAGTAGGGTAAACAGCTTCCTAAATGGATACATGCAGGGATATAGTCCAAATAATGTTGGAGGCTATGGGCTTAGGATGGATAATAGATTTAGTCCAGTTGCTGGTGGTCGAAGTGGATTTCCTCCTTTTGCTTCTGGTTATGGAATGAGTATGAATTTTGATCCTAGTTTGAGTCCTGGTTTTGGAGCAACCACGAATTATAATAGCAATCTTAGCTCTGGACGAGGGCTGAACCCATACTTCATTGGCAATTCAAACAGGTTTGGTAATCCTATAGGTTATGATGGGAATAATGGAAGAAACAGCTCTTTCTTTAGCTCAGTGACTCGAAATTTGTGGGGCAACAGAGGTCCTAGTCAGGGAACAGGTTCTACAAGTTCAAACTCATACATGGGACTGGGGAGTGGTAATGTTGGTGGAAATGCCTTTGATAATGCTGGAGTCAACTGGGGTACTGCAGCAAATGCCGATCAAGGTGTAGGAAACAATAGCTCCCTAAATAGTGGAAATCTTGGGTATGGAGGTGATGAGATTAATGACTATGGTTTGGTAACAGGAGCATATGGCAGAAGTAGTGGTACAAGTAATGTTCCGGCACCATCATACTCTTCATTAAATGGTGGTTTTGATGGGGCCTTTTCTGACATTTATGGTTCCACTTCAGTTTATAATGACCCGACTTGGAGGTCCTCAAATTCTGAGCAAGCTGGTTCCAGCCCCTTTGGTTATGGGCTTGGTAGTGCTGCAGCAGATGTTTCTGCAAGGAATTCTGCTGGTTATGTTGGTGGTTATGGTGTTAATAAGAGACAATCCCATAGTGGAATTGCTACATAG 1437 0.4315 MQTDNGKLFVGGISWDTNEDRLKEYFSSYGEVVEAVIMKDRATGRARGFGFVVFADPRFADIVTKEKHNIDGRMVEAKKAVPRDDQNVLSRNSGSSIQGSPGRTRKIFVGGLASSVTENDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNGKMVEVKRAVPKESLPGPGRSPLGGYNYGLSRVNSFLNGYMQGYSPNNVGGYGLRMDNRFSPVAGGRSGFPPFASGYGMSMNFDPSLSPGFGATTNYNSNLSSGRGLNPYFIGNSNRFGNPIGYDGNNGRNSSFFSSVTRNLWGNRGPSQGTGSTSSNSYMGLGSGNVGGNAFDNAGVNWGTAANADQGVGNNSSLNSGNLGYGGDEINDYGLVTGAYGRSSGTSNVPAPSYSSLNGGFDGAFSDIYGSTSVYNDPTWRSSNSEQAGSSPFGYGLGSAAADVSARNSAGYVGGYGVNKRQSHSGIAT* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00341 478 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Pte8g00341 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 165 IPR000504 GO:0003723
Pte8g00341 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 65 IPR000504 GO:0003723
Pte8g00341 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 182 IPR000504 GO:0003723
Pte8g00341 478 FunFam Heterogeneous nuclear ribonucleoprotein 1 102 189 - -
Pte8g00341 478 SUPERFAMILY RNA-binding domain, RBD 100 202 IPR035979 GO:0003676
Pte8g00341 478 Gene3D - 102 187 IPR012677 -
Pte8g00341 478 SMART rrm1_1 106 178 IPR000504 GO:0003723
Pte8g00341 478 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pte8g00341 478 SUPERFAMILY RNA-binding domain, RBD 3 101 IPR035979 GO:0003676
Pte8g00341 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pte8g00341 478 CDD RRM2_Hrp1p 106 183 - -
Pte8g00341 478 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Pte8g00341 478 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 472 - -
Pte8g00341 478 Gene3D - 4 88 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00341 Pte-Chr8 9134696 9138745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00341 8 184 Eukaryotic Initiation Factors Gene Family AT2G36660 32.432 3.61e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00341 K14411 - gmx:100795907 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte8g00341 8 9134696 9138745 Pte8g00341 8 9134696 9138745 RCT