Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00335 ATGTCCACCCCGCATGCAGATTCCAATCCCAATTGCAATTACAACAATGATCCAGGGGCAGTGTCTTGCCTTTATGATTTATTGTGTTCAGAAGCGCCAAGTTGGACTTCACACAAGGAGGAATGTACAGCTTCTGATCCACAAGAAAGGCTAGAAAGTCTGAGTCGTCAATCTGGGAATAGGTTTTGTGCTGATTGTGGATCACCAGATCCAAAATGGGTATCATCAAGCCTCGGAGTTTTCATATGCATCAAGTGCTCTGGTGTACATAGAAGTCTTGGAGTGCATGTATCTAAGGTTTTCTCAGTGAAGCTAGATGAATGGAAAGAAGAAGAAGTTGACACTCTAGTAAAGCTTGGTGGAAATAATTTGCTGAATAAAAAATATGAAGCTTGCATTCCAAAGAACATTACGAAACCAAATCCAAACTCTACCAACGAGGAGCGCTCAGATTTTATTAGGAGAAAATATGAGCAGCTACAGTTTCTGGGAAATGACAACATGTCTCTCTCATTCCAGTCATCTGATGATGCAATGGCTTGTCCATTAAATCCAAATAGAAGACATTCATCCTCTCACGGCAGTTCTTCAGCAAATCATTATGCATTCGATAAGAAAATATTTGAGCATGCCACCAAAAGTCGCATTGGACAGGCACTTCGCAGTAGTTGGGTGAAAAAAGAGCCAGATCCAAAGGTTACCAAAAAGAGCCACACACTGGCAGGCATGATCGAATTTGTTGGACTGATTAAAGTTCATGTGCTTCGAGGCACCAACCTGGCTGTCAGAGATGTGAAGAGCAGTGACCCTTATGTCGTCATTGCTATTGGTCAACAGTCAGTGAAGACAAAGGTGATAAAGAACTGTTTAAACCCTGTATGGAACGAAAACCTAATGCTCTCAATACCTGAGGAAATTCCTCCTCTGAAAGTGTCTGTGTATGACAAAGACAAGTTCTCTCATGACGACTTCATGGGTGAGGCTGAGATAGACATACAGCCCTTGCTGGATGCTGCTAAGGCTTGTGAGAAATTCGACATACGAGAGACAGCAGAACTTGAGAAGTGGTTAGAAAGCAGAGAGAACAACCAATTCATAGATGGTATCCTCAAGATAGTCGATGGAAAGGTTAGACAGGAAACTTGGGTGATGCTGCAGAATGTTGAGAGGGGTTGTATAGAGATTGAGCTCGAGTGTGTTCCTCTAACTCAATAG 1215 0.4247 MSTPHADSNPNCNYNNDPGAVSCLYDLLCSEAPSWTSHKEECTASDPQERLESLSRQSGNRFCADCGSPDPKWVSSSLGVFICIKCSGVHRSLGVHVSKVFSVKLDEWKEEEVDTLVKLGGNNLLNKKYEACIPKNITKPNPNSTNEERSDFIRRKYEQLQFLGNDNMSLSFQSSDDAMACPLNPNRRHSSSHGSSSANHYAFDKKIFEHATKSRIGQALRSSWVKKEPDPKVTKKSHTLAGMIEFVGLIKVHVLRGTNLAVRDVKSSDPYVVIAIGQQSVKTKVIKNCLNPVWNENLMLSIPEEIPPLKVSVYDKDKFSHDDFMGEAEIDIQPLLDAAKACEKFDIRETAELEKWLESRENNQFIDGILKIVDGKVRQETWVMLQNVERGCIEIELECVPLTQ* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00335 404 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 247 342 IPR035892 -
Pte8g00335 404 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 43 404 IPR044518 GO:0005096|GO:0005543
Pte8g00335 404 Pfam C2 domain 249 345 IPR000008 -
Pte8g00335 404 ProSiteProfiles ARF GTPase-activating proteins domain profile. 48 170 IPR001164 GO:0005096
Pte8g00335 404 FunFam stromal membrane-associated protein 1 isoform X1 34 168 - -
Pte8g00335 404 Gene3D Arf GTPase activating protein 31 170 IPR038508 -
Pte8g00335 404 Gene3D C2 domain 247 404 IPR035892 -
Pte8g00335 404 Pfam Putative GTPase activating protein for Arf 49 163 IPR001164 GO:0005096
Pte8g00335 404 ProSiteProfiles C2 domain profile. 229 345 IPR000008 -
Pte8g00335 404 SMART arf_gap_3 48 170 IPR001164 GO:0005096
Pte8g00335 404 SMART C2_3c 249 344 IPR000008 -
Pte8g00335 404 PRINTS HIV Rev interacting protein signature 60 79 IPR001164 GO:0005096
Pte8g00335 404 PRINTS HIV Rev interacting protein signature 100 121 IPR001164 GO:0005096
Pte8g00335 404 PRINTS HIV Rev interacting protein signature 79 96 IPR001164 GO:0005096
Pte8g00335 404 SUPERFAMILY ArfGap/RecO-like zinc finger 48 163 IPR037278 -
Pte8g00335 404 CDD C2_ArfGAP 247 391 - -
Pte8g00335 404 CDD ArfGap 51 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00335 Pte-Chr8 8356820 8363398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00335 48 405 C2H2 Transcription Factor Family AT4G21160 45.810 8.59e-110 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00335 K12486 - qsa:O6P43_029685 496.893