Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00334 ATGGGATCTAGCTCTCCATTTTTTGATGATGTGCTTAAATGTGAGGTGGATCCTCCTCATAGTGAAGATACTATGGACATCAATGAGCATATTAATGATCCATCTCAAAATGGACTTAAACCCAATGTGACTGTTTCCAGTAGTGTTCGTGAGCTTCTGGAGTGTCCAGTGTGTTTAAATGCAATGTATCCCCCTATCCACCAGTGTTCAAATGGCCACACTTTATGTTCTGGTTGCAAGCCCAAGGTGCACAATAGGTGTCCTACTTGTAGGCATGATCTCGGGAATATCAGGTGTCTTGCCTTGGAGAAGGTGGCTGCATCATTGGAGCTTCCATGTAAATATCAAAGCTTTGGGTGCATGGGCATATACCCTTATTATAGTAAATTAAAACATGAATCTCAATGCTGTTATAGACCCTATAATTGTCCCTACGCTGGATCTGAATGTACGGTTATTGGTGACATACCTTATCTTGTGACCCATCTGAAAGATGATCATAAAGTTGACATGCACAGTGGAAGCACGTTTAATCATCGCTACGTCAAATCAAATCCACAAGAGGTTGAAAATGCTACATGGATGTTAACGGTTTTCAGTTGCTTTGGTCAGTATTTTTGTCTTCATTTTGAGGCTTTTCAGCTAGGAATGGCTCCGGTCTACATAGCATTCTTACGTTTCATGGGGGATGATAATGAGGCAAAGAACTATAGCTACAGTCTGGAGGTGGGTGGAAATGGGAGGAAGTTAATTTGGCAGGGAGTGCCTAGAAGCATTAGGGATACCCACAGGAAAGTCCGCGATAGTTTCGATGGCCTCATCATCCAAAGGAATATGGCTCTCTTCTTCTCAGGGGGTGACCGGAAGGAACTAAAGCTACGTGTCACTGGAAGGATTTGGAAAGAACAGTGA 912 0.4287 MGSSSPFFDDVLKCEVDPPHSEDTMDINEHINDPSQNGLKPNVTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPKVHNRCPTCRHDLGNIRCLALEKVAASLELPCKYQSFGCMGIYPYYSKLKHESQCCYRPYNCPYAGSECTVIGDIPYLVTHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKLIWQGVPRSIRDTHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00334 303 CDD Sina 169 297 - -
Pte8g00334 303 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 162 296 IPR008974 GO:0005515
Pte8g00334 303 Pfam Seven in absentia protein family 97 296 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pte8g00334 303 ProSiteProfiles Zinc finger RING-type profile. 55 91 IPR001841 -
Pte8g00334 303 CDD RING-HC_SIAHs 53 91 - -
Pte8g00334 303 SUPERFAMILY RING/U-box 47 95 - -
Pte8g00334 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 161 IPR013083 -
Pte8g00334 303 SUPERFAMILY TRAF domain-like 108 300 - -
Pte8g00334 303 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 40 302 - -
Pte8g00334 303 ProSiteProfiles Zinc finger SIAH-type profile. 108 168 IPR013010 GO:0008270
Pte8g00334 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 107 IPR013083 -
Pte8g00334 303 FunFam E3 ubiquitin-protein ligase SINAT3 107 163 - -
Pte8g00334 303 FunFam E3 ubiquitin-protein ligase SINAT5-like 164 296 - -
Pte8g00334 303 FunFam E3 ubiquitin-protein ligase SINAT5-like 13 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00334 Pte-Chr8 8348654 8353503 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00334 46 304 C3H Transcription Factor Family AT2G41980 78.764 9.84e-159 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00334 K04506 - qsa:O6P43_001462 598.586