Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00329 ATGGATCTTGAAAAAAACCTCTCTCAGAACTTTGGCTTTCACTCAATGCATTTGACTGATACTTACATGAACCTCACCATGACAGATGAACTCCACTTTGGAGTTTGTTCATCAAAGGGTTTCTTGCAAGATCGTTTCCACCATCTTGATCAGTTTCATGCCAATGGGACACCGTCCATTTCAGTTTTTGACAATTTCACCTATGGTTACACGTCAGAATTTGACATTCACGAGTGCAAACCCTCTGCTGAAAACAATGACCGGCAAGCTTATGTCATGGACAATAACCAATGTCGAGAGTATGGCTTAAACCTTCCTGAGAGGCCTGCGATGGATATGGTGGGAGAAAACCATGGTTATATGTCTTTCGATCGTCAAGAAATCAAACCTGCGAGTTTCATTTGTCCAGATGAAGCGTCACGCATATCCCCGGGAGATGGGTATTACAAAAAAGTTTGCTTGGATAAGAATAGAGCTTCTGCTATCAACAGAAGAACCAACAAAGTTAGAAAGAAGCCCGACTTTGTTAAGGGGCAGTGGACTCTTGAGGAAGATAGGTTGTTGGTTCAACTGGTTGAGCAATATGGGACAAGGAAATGGTCTCACATTGCTAAAATGCTGCCTGGTCGAATAGGAAAGCAGTGTAGAGAGAGATGGCATAACCATCTGAGGCCTGACATTAAGAAAGATACATGGAGTGAAGGAGAGGATAACATATTGATTCAAGCGCACTCGGAGATAGGAAATAAGTGGGCAGAGATTGCCAAAAGATTACCAGGAAGAACTGAAAACTCCATCAAGAACCACTGGAATGCCACCAAGAGAAGACAATACTCAAAAAGAAAATCCCTTTCGAAGTACCCACAAGGGTCTGTTCTCCAAGAATATATCAAGAGTTTGAACCTGGAAACCAACCCACCAATGGACTGTTGGAAAAGTTCTTCAGCCACAGCAAACAGATTGGCAACTCAACCTCAGCACGGAAATCAACTTTGCACTACTGATAGGCTGGTAACGTGCTATGAGTTTGATGATGTACGGGGAGTTTGTTTTGACAAGAACATGTTTCAAGAGGCTTGCAGCATTGATTCTCTTCTTGATATTATGCCATGTGCTCCAGTTATGGATGAGAAAGATAATCAACAAAGTATGACAGCTGATCATGCTCCTGCAATTGACACTGATTATAACAAAAGCAAAAACATATACCCATCAGCAAACAATGATGTTAAGGAGCTGGACTTGGTGGAGATGATATCTGAAGTCATTCTTTATGTGTAA 1281 0.4176 MDLEKNLSQNFGFHSMHLTDTYMNLTMTDELHFGVCSSKGFLQDRFHHLDQFHANGTPSISVFDNFTYGYTSEFDIHECKPSAENNDRQAYVMDNNQCREYGLNLPERPAMDMVGENHGYMSFDRQEIKPASFICPDEASRISPGDGYYKKVCLDKNRASAINRRTNKVRKKPDFVKGQWTLEEDRLLVQLVEQYGTRKWSHIAKMLPGRIGKQCRERWHNHLRPDIKKDTWSEGEDNILIQAHSEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKSLSKYPQGSVLQEYIKSLNLETNPPMDCWKSSSATANRLATQPQHGNQLCTTDRLVTCYEFDDVRGVCFDKNMFQEACSIDSLLDIMPCAPVMDEKDNQQSMTADHAPAIDTDYNKSKNIYPSANNDVKELDLVEMISEVILYV* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00329 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 172 227 IPR017930 -
Pte8g00329 426 Pfam Myb-like DNA-binding domain 180 237 - -
Pte8g00329 426 SUPERFAMILY Homeodomain-like 174 270 IPR009057 -
Pte8g00329 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 228 278 IPR017930 -
Pte8g00329 426 ProSiteProfiles Myb-like domain profile. 172 223 IPR001005 -
Pte8g00329 426 FunFam Transcriptional activator Myb isoform A 176 229 - -
Pte8g00329 426 SMART sant 228 276 IPR001005 -
Pte8g00329 426 SMART sant 176 225 IPR001005 -
Pte8g00329 426 CDD SANT 231 274 IPR001005 -
Pte8g00329 426 PANTHER MYB PROTEIN-RELATED 154 317 - -
Pte8g00329 426 FunFam Transcription factor MYB119 230 294 - -
Pte8g00329 426 CDD SANT 180 223 IPR001005 -
Pte8g00329 426 Gene3D - 231 295 - -
Pte8g00329 426 Gene3D - 176 228 - -
Pte8g00329 426 ProSiteProfiles Myb-like domain profile. 224 274 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00329 Pte-Chr8 8218285 8219770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00329 126 370 MYB Transcription Factor Family AT4G18770 52.692 6.29e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte8g00329 Myb_DNA-bind_6 2.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00329 K09422 - gmx:100816653 447.588