Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00312 ATGGATAAGGAGCGCCCATGTGCTAATAACTGGGGGAGGCCTTCTTCCTCCTCTTCTGCAAATCAGGCAAACTTATCCATAGATCCTCCTCCATTTCCAAATTTCAGTATGCAAAGCATGCATCCCAAGTGGAAAAGTACATCTAACTCAGACTATGGCACCAGTACGGAAGAACCTTTTCAAGAGTTAAATCAATCTACTGCACTCCTTTCTTCTGTACCCCGCAGTTTTAATAACCAGATAGAAACCCAAGACGATGGAAATGGTGAGATGAGTGAAACACGGCTAAGTAACAAGATCCAAGATTGGGATCCAAGGGCAATGTTGATTAACCTGTCTTTTTTGGAGGACAAGATTCATCAACTACAAGATCTTGTGCATTTGATTGTTGGTCGGAAAGGCCAAGTTCAGGGAGTAGCAGATGAACTTGTAACTCGGCAACAGCAGCTCATCAACGCTGATCTTACATCAATCATTGCTCAGTTAATCTCAACTGCTGGCAGTCTGCTTCCATTTGTCAAGCAATCTCTTACTGCTGCTACATCCATTACTCAACTTGGAGGAGTTACCTGTCCTCCTGAAGTAGGCATAAATAGTAATGTTGAACCTCCTAAAAATGCTGGAAACCCAGTTGCTGATCATTGTCACCAAGTTGATCTAACTGCTATGTGCGGGACAGAGCAGAATTCCCATATTGAAGAGCACGAAGCAAAAGAAGATGAAGATATGGATGATGGAGAAAACCTTCCCCCTGGTTCATATGAAATCTTGCAGCTGGAGAAAGAAGAAATTCTTGCACCTCACACTCACTTCTGCACTATATGCGGCAAGGGTTTCAAACGCGATGCTAACCTAAGAATGCACATGAGAGGTCATGGGGATGAGTACAAAACCCCGGCTGCACTTGCTAAACCCCACAAAGAGTCTAGCGTTGAATTGACTCTTCTGAAGAGGTATTCATGTCCCTTTGTTGGCTGCAAGCGTAACAAGGAGCACAAGAAGTTTCAGCCATTGAAGACCATTTTATGTGTCAAGAACCATTACAAGAGAACTCATTGTGACAAGAGTTATACTTGCAGCAGATGCCATACCAAGAAGTTTTCAGTCATGGCAGATCTTAAGACTCATGAAAAGCATTGCGGTAAGGACAAATGGCTTTGTTCATGTGGTACAACATTCTCTAGGAAGGACAAGCTTTTCGGACACGTTGCTTTGTTCCAAGGACATACGCCAGCCATTCACTCGGATGAAAATAAAGCAACAGCCTTGCCTCCCAAACGTGGGGAATGCAAAGAAGCAATAGTAAAGGCTGGAAGTGTGAACTTCAGTTTCGGATCACCAGCCGGAGGAGATGGAGTTCAGGGCATTGTGAATGCTGACGATTCCAGCAGCAATTTCTTCACTTCATTGAATTTTGATACAAGCAATTTTGGTGGGTTTCCGGAGTTCCCTCGACCCCTATTTGATGATTCGGATAACTTATTCTCATTTCATTTTCTGGGAAATTTTGATTACACTCGAAACTCTGGAGGTGAATTGAGTTCTAACAATTTTTGA 1557 0.4316 MDKERPCANNWGRPSSSSSANQANLSIDPPPFPNFSMQSMHPKWKSTSNSDYGTSTEEPFQELNQSTALLSSVPRSFNNQIETQDDGNGEMSETRLSNKIQDWDPRAMLINLSFLEDKIHQLQDLVHLIVGRKGQVQGVADELVTRQQQLINADLTSIIAQLISTAGSLLPFVKQSLTAATSITQLGGVTCPPEVGINSNVEPPKNAGNPVADHCHQVDLTAMCGTEQNSHIEEHEAKEDEDMDDGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESSVELTLLKRYSCPFVGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHVALFQGHTPAIHSDENKATALPPKRGECKEAIVKAGSVNFSFGSPAGGDGVQGIVNADDSSSNFFTSLNFDTSNFGGFPEFPRPLFDDSDNLFSFHFLGNFDYTRNSGGELSSNNF* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00312 518 ProSitePatterns Zinc finger C2H2 type domain signature. 272 292 IPR013087 -
Pte8g00312 518 SMART c2h2final6 270 292 IPR013087 -
Pte8g00312 518 SMART c2h2final6 357 379 IPR013087 -
Pte8g00312 518 SMART c2h2final6 319 352 IPR013087 -
Pte8g00312 518 SUPERFAMILY beta-beta-alpha zinc fingers 268 295 IPR036236 -
Pte8g00312 518 ProSiteProfiles Zinc finger C2H2 type domain profile. 270 297 IPR013087 -
Pte8g00312 518 Gene3D Classic Zinc Finger 254 321 - -
Pte8g00312 518 MobiDBLite consensus disorder prediction 1 57 - -
Pte8g00312 518 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 87 438 IPR044300 GO:0010044|GO:0010447
Pte8g00312 518 MobiDBLite consensus disorder prediction 10 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00312 Pte-Chr8 7256485 7259240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00312 238 519 C2H2 Transcription Factor Family AT1G34370 66.782 5.68e-133 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte8g00312 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00312 - - qsa:O6P43_004100 685.641