Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00276 ATGCTAGGGTTTGGAGAGAATAGTAGCACTGGACTTTCTTCCACGAGGATGATGATGCCTGTAACTGATTCCGGGTCAGGATCAGCAAATAGGCAGTTTCTTCTTCCACCTCTGCACAACAAGGGTAATAATGCTAGTGACCAAAGGGCTTCTGCTTCTTCCAATGTCATCCATGAGAAATATAACCTGCCTCAAGACCCTGAATCTGATGGTCATACCATGAGGGCCAAGATAATGGCACACCCTCTTTTCCCTCGACTGTTAATAGCTTATGCTAATTGCCAGAAGGTTGGTGCTCCAGATGAAGTGGCGGCTAGATTAGAAGATGCATGTGCTAAGTCAGATTTTGCAGCAGAAGCTAAAACTAGAAGAGGCTGCATGGGAGAAGATCCAGGATTGGACCAGTTTATGGAGGCCTATTGTGAGATGCTGATCAAGTACGAGCAAGAGCTTACGAAACCCTTTCAAGAAGCAATGCTTTTCTTCTCTAGGATCGACAGTCAATTGAAAGCCCTAGCAGGTCAAACTTGTTCATCTGGTCCCGAAAAAGGTGAGGCATGCAGCAACCACATAGATCCCTTGGCTGAGGACATAGAATTGAAAACTCAACTCATGCAAAAGTATAGTGGTTATTTGGGAAGCCTCAGGCAAGAATTCTTGAAGAAGAAAAAGAATGGAAAGCTTCCCAAACAAGCCCGACAGCTGCTGCTAGATTGGTGGAGCAGACATTGCAAATGGCCTTATCCAACGGAAGCTCAAAAACTAGCACTTGCTCAAGCTACAGGTTTGCATTTGAAACAGATAAACAACTGGTTTATCAATCAGAGAAAACGGCACTGGAAACCTTGTGAGGATATGCAGTACATTATGATGGATTCTAATACAAACTCAGACCTAGGCGTGGAAAATGCCATGTGCAAACCCTATGCTTTTGATTACATGCCCATGCTACTTTAA 957 0.441 MLGFGENSSTGLSSTRMMMPVTDSGSGSANRQFLLPPLHNKGNNASDQRASASSNVIHEKYNLPQDPESDGHTMRAKIMAHPLFPRLLIAYANCQKVGAPDEVAARLEDACAKSDFAAEAKTRRGCMGEDPGLDQFMEAYCEMLIKYEQELTKPFQEAMLFFSRIDSQLKALAGQTCSSGPEKGEACSNHIDPLAEDIELKTQLMQKYSGYLGSLRQEFLKKKKNGKLPKQARQLLLDWWSRHCKWPYPTEAQKLALAQATGLHLKQINNWFINQRKRHWKPCEDMQYIMMDSNTNSDLGVENAMCKPYAFDYMPMLL* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00276 318 ProSitePatterns 'Homeobox' domain signature. 257 280 IPR017970 GO:0000981|GO:0006355
Pte8g00276 318 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 54 289 - -
Pte8g00276 318 Pfam KNOX2 domain 127 172 IPR005541 GO:0003677|GO:0005634
Pte8g00276 318 ProSiteProfiles ELK domain profile. 199 219 IPR005539 GO:0003677
Pte8g00276 318 MobiDBLite consensus disorder prediction 1 71 - -
Pte8g00276 318 Pfam ELK domain 199 220 IPR005539 GO:0003677
Pte8g00276 318 CDD homeodomain 231 282 IPR001356 GO:0003677
Pte8g00276 318 SUPERFAMILY Homeodomain-like 221 293 IPR009057 -
Pte8g00276 318 SMART HOX_1 221 286 IPR001356 GO:0003677
Pte8g00276 318 Pfam KNOX1 domain 73 114 IPR005540 GO:0003677|GO:0005634
Pte8g00276 318 SMART ELK_2 199 220 IPR005539 GO:0003677
Pte8g00276 318 ProSiteProfiles 'Homeobox' domain profile. 219 282 IPR001356 GO:0003677
Pte8g00276 318 SMART KNOX2_2 123 174 IPR005541 GO:0003677|GO:0005634
Pte8g00276 318 SMART KNOX1_2 72 116 IPR005540 GO:0003677|GO:0005634
Pte8g00276 318 MobiDBLite consensus disorder prediction 1 60 - -
Pte8g00276 318 Pfam Homeobox KN domain 239 278 IPR008422 GO:0003677|GO:0006355
Pte8g00276 318 Gene3D - 217 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00276 Pte-Chr8 6259561 6262536 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00276 74 314 Homeobox Transcription Factor Family AT1G62360 58.366 1.62e-95 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pte8g00276 KNOX2 1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00276 - - gmx:100791704 355.91