Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00167 ATGTCACGGACTGATAGGATGACTTTAGATCTTAACAGAACTGGCACTGTTGAAAGAGACATCGAGCAGGCCATCACTGCTTTAAAGAAAGGGGCATACTTGCTGAAGTATGGGAGAAGGGGCAAGCCCAAGTTTTGCCCATTCCGACTTTCCAATGACGAATCTGTTTTAATATGGTTCTCTGGGAAAGAAGAGAAACACCTCAAACTAAGTCATGTTTCAAGAATCATATCTGGACAGCGCACACCAATCTTCCAAAGGTACCCACGGCCTGAAAAGGAGTACCAATCCTTTTCTCTCATATATAATGACAGGTCACTGGATTTGATATGCAAAGATAAAGATGAAGCAGAGGTCTGGTTTAGTGGTTTAAAAGCATTAATTTCACGGAGCCATCATCGAAAGTGGAGAACCGAATCAAGGAGTGATGGTGTTTTATCTGAAGCCAATAGTCCTCGAACTTACACACGAAGAAGTTCTCCCCTTAATTCTCCATTTGGAAGCAACGAGAGCTTGCAAAAGGATAGTGGAGATCAACTTCGCCTTCATAGTCCTTATGAAAGTCCCCCTAAGAATGGTCTGGATAAAGCATTATCAGATGTTATAGTCTATGCTGTTCCCCCAAAGGGATTCTTCCCCTCAGATTCTGCTAGTGGCTCTGTCCACTCTATATCATCTGGAGGATCAGATAGTATACATGGACACATGAGAACGATGGCAATGGATGCTTTTAGAGTTAGTCTGTCAAGTGCTGTTAGCTCTTCTAGTCAGGGATCTGGTCATGATGATGGAGATGCACTAGGTGATGTTTTCATTTGGGGTGAAGGCATAGGAGATGGTGTTCTTGGTGGTGGACCTCACCGAGTTGGGAGTTCTTGTGGTGTAAAAATGGATTCATTGTTGCCTAAAGCCTTAGAATCTGCAGTAGTACTTGATGTACAAAATATTGCATGTGGTGGACGACATGCTGCCTTAGTAACAAAACAAGGAGAAATTTTCTCCTGGGGGGAGGAATCAGGAGGCAGGCTTGGACATGGTGTAGACTCTGATGTCATGCATCCAAAGCTCATAGAAGCTCTCAGCAATACCAACATTGAACTTGTAGCCTGTGGTGAATATCATACTTGTGCTGTAACACTTTCAGGTGATCTGTATACATGGGGTGATGGAACACACAATTTTAGTCTATTGGGGCATGGTAATGAATTGAGCCATTGGGTTCCAAAGAGAGTAAATGGGCCTCTGGAGGGCATACACGTGTCGTACATCTCATGTGGACCCTGGCATACGGTTGTTGTGACATCTTCTGGGCAATTATTTACTTTTGGTGATGGCACATTTGGTGTGCTTGGCCATGGTGATCGAAAATGTGTTTCCATACCTAGGGAAGTAGAATCTCTTAAGGGGCTCCGCACTGTGCGGGCTGCTTGTGGTGTTTGGCACACTGCTGCAGTTGTGGAAGTCATGGTTGGTAATTCTAGTTCTAGCAACTGCTCTTTAGGGAAGTTGTTCACTTGGGGCGATGGAGATAAATGGCGGCTTGGGCATGGTGACAAGGAGGCTAAACTGGTTCCAACATGTGTTGCTGCTCTTGTAGAGTCCAACTTCTGCAAAGTTGCTTGTGGTCATAGTCTTACTGTTGCGCTTACAACCTCAGGCCATGTGTATACAATGGGTAGTCCTGTCTATGGTCAATTAGGAAATCCTCAAGCCGATGGAAAACTACCAAGCCGTGTCGAAGGGAAGCTCTCCAAGAGTTTTGTGGAGGAGATAACATGTGGTGCGTACCATGTTGCTGTTTTAACTTCAAGAACTGAAGTTTACACATGGGGAAAAGGAGCAAATGGTCGATTGGGGCAAGGGGATGTAGATGACAGAAATTCCCCAACATTGGTAGAAGCTCTCAAAGATAAGCAAGTCAAGAGTATTGCTTGTGGTACCAATTTCACTGCAGTTATTTGCCTTCATAAGTGGGTATCTGGAATTGACCAGTCTATGTGTTCTGGCTGCCGTCTGGCATTTAATTTTAAAAGGAAACGTCACAATTGTTACAATTGTGGACTGGTTTTCTGTCATTCATGCAGCAGTAAAAAGTCTCTCAAGGCATCTATGGCACCAAATCCCAACAAACCATATCGTGTCTGTGATACTTGTTTTAATAAACTACAAAAAGCGACGGAAATAGATGGTTCATCTCATTCTTCTATGAGTAGAAGAGGAAGTGTTAATCAACTCTCTCTTGAGTCCGTTGGGAAAGATGACAAGTTGGACTCCAAATCTCGAGCGCAGCTTGCAAGATTCTCTCCGATGGAATCCTTGAAGCAAGTTGAAACCCGATCATCCAAGAAGAACAAGAAATTGGAATTTAACAGCAGTCGAGTCTCACCTGTTCCTAATGGTGCTCGTAATATTTCGAAAGCTCTTAATCCTGTGTTTGGTTCATCGAAGAAGTTTTTCTCTGCTTCTGTTCCTGGATCTAGAATTGTTTCTCGTGCAACCTCGCCAATATCAAGGCGACCCAGCCCACCTCGTTCCACAACTCCTACTCCAACATTGGGAGGACTCACCTCTCCAAAGATAGTTGTGGATGATGCTAAGCGAACCAATGATAACCTCAGCCAGGAGGTTATTAAATTAAGGGCGCAGGTCGAAAATCTCACTCGCAAAGCCCAACTTCAAGAAGTTGAGCTTGAAAGAACAACTATGCAGTTAAAGGAAGCAATAGCCATTGCAGGTGAAGAAACAGCAAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCACTTACAGCCCAATTGAAGGAAATGGCCGAGAGGCTGCCCATCGGAGCTGCTCGAAATGTCAAATCACCTTCTCTTGCTTCCCTCGGATCCAGTCCTATTTCTGGTGAACTTTGTAATATCTCTCTAGACAGAATGAATGTCCAATCAACAGCCCAAGAACTAGATACAAATGGTTCGAATGGTCCATTCCTGTCTAATGGACTGGGCACAAACCCTAATCGTTCCTCCAATCTCAACAAACAGAATCAATCAGATGCAACAGCCAGGAACGGAGTCAGAACAAAAGAAACTGAATCTCGCAATGAAACTGAATGGGTAGAGCAGGATGAACCTGGAGTATATATAACGCTTACCTCCTTTCCAGGAGGTTTAATTGATCTTAAGAGAGTTCGCTTCAGGTATACATACACATTCTTTTACAGCATTACTCATTGTTATTGGGTTTTTTCCTTTACCCTCCCTCTTGCAAAAAGATCAAACCATGAAAAGTCAGTACTAGTTCGTTGTGTTGTCTTTCCATTCTTATTTTATCATATAAGGTGCTGTTTTTTCTCTTTATTGTACGTCTAA 3351 0.4336 MSRTDRMTLDLNRTGTVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGVLSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDQLRLHSPYESPPKNGLDKALSDVIVYAVPPKGFFPSDSASGSVHSISSGGSDSIHGHMRTMAMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGIGDGVLGGGPHRVGSSCGVKMDSLLPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVMHPKLIEALSNTNIELVACGEYHTCAVTLSGDLYTWGDGTHNFSLLGHGNELSHWVPKRVNGPLEGIHVSYISCGPWHTVVVTSSGQLFTFGDGTFGVLGHGDRKCVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSLGKLFTWGDGDKWRLGHGDKEAKLVPTCVAALVESNFCKVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPSRVEGKLSKSFVEEITCGAYHVAVLTSRTEVYTWGKGANGRLGQGDVDDRNSPTLVEALKDKQVKSIACGTNFTAVICLHKWVSGIDQSMCSGCRLAFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDTCFNKLQKATEIDGSSHSSMSRRGSVNQLSLESVGKDDKLDSKSRAQLARFSPMESLKQVETRSSKKNKKLEFNSSRVSPVPNGARNISKALNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDNLSQEVIKLRAQVENLTRKAQLQEVELERTTMQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKEMAERLPIGAARNVKSPSLASLGSSPISGELCNISLDRMNVQSTAQELDTNGSNGPFLSNGLGTNPNRSSNLNKQNQSDATARNGVRTKETESRNETEWVEQDEPGVYITLTSFPGGLIDLKRVRFRYTYTFFYSITHCYWVFSFTLPLAKRSNHEKSVLVRCVVFPFLFYHIRCCFFSLLYV* 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00167 1116 MobiDBLite consensus disorder prediction 139 193 - -
Pte8g00167 1116 FunFam PH, RCC1 and FYVE domains-containing protein 1 239 490 - -
Pte8g00167 1116 Coils Coil 918 938 - -
Pte8g00167 1116 Pfam Pleckstrin homology domain 22 128 IPR001849 -
Pte8g00167 1116 Gene3D - 19 137 IPR011993 -
Pte8g00167 1116 Gene3D - 497 668 IPR009091 -
Pte8g00167 1116 MobiDBLite consensus disorder prediction 729 804 - -
Pte8g00167 1116 Coils Coil 862 903 - -
Pte8g00167 1116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 669 729 IPR013083 -
Pte8g00167 1116 MobiDBLite consensus disorder prediction 979 1031 - -
Pte8g00167 1116 MobiDBLite consensus disorder prediction 143 175 - -
Pte8g00167 1116 FunFam Putative E3 ubiquitin-protein ligase HERC1 663 731 - -
Pte8g00167 1116 FunFam PH, RCC1 and FYVE domains-containing protein 1 491 662 - -
Pte8g00167 1116 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 475 485 IPR000408 -
Pte8g00167 1116 SUPERFAMILY FYVE/PHD zinc finger 657 728 IPR011011 -
Pte8g00167 1116 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 661 723 IPR017455 -
Pte8g00167 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 330 381 IPR000408 -
Pte8g00167 1116 ProSiteProfiles BRX domain profile. 1030 1099 IPR013591 -
Pte8g00167 1116 PRINTS Chromosome condensation regulator RCC1 signature 439 453 IPR000408 -
Pte8g00167 1116 PRINTS Chromosome condensation regulator RCC1 signature 600 621 IPR000408 -
Pte8g00167 1116 PRINTS Chromosome condensation regulator RCC1 signature 542 560 IPR000408 -
Pte8g00167 1116 PRINTS Chromosome condensation regulator RCC1 signature 313 326 IPR000408 -
Pte8g00167 1116 PRINTS Chromosome condensation regulator RCC1 signature 382 398 IPR000408 -
Pte8g00167 1116 PRINTS Chromosome condensation regulator RCC1 signature 332 348 IPR000408 -
Pte8g00167 1116 PRINTS Chromosome condensation regulator RCC1 signature 423 439 IPR000408 -
Pte8g00167 1116 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 64 934 - -
Pte8g00167 1116 Gene3D - 217 392 IPR009091 -
Pte8g00167 1116 Gene3D - 393 496 IPR009091 -
Pte8g00167 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 605 656 IPR000408 -
Pte8g00167 1116 MobiDBLite consensus disorder prediction 729 748 - -
Pte8g00167 1116 Pfam FYVE zinc finger 657 723 IPR000306 GO:0046872
Pte8g00167 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 381 433 IPR000408 -
Pte8g00167 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 501 549 IPR000408 -
Pte8g00167 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 552 601 IPR000408 -
Pte8g00167 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 436 485 IPR000408 -
Pte8g00167 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 330 378 IPR000408 -
Pte8g00167 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 606 653 IPR000408 -
Pte8g00167 1116 CDD PH_PLC_plant-like 19 129 - -
Pte8g00167 1116 Pfam Transcription factor BRX N-terminal domain 913 945 IPR027988 -
Pte8g00167 1116 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 423 433 IPR000408 -
Pte8g00167 1116 Pfam Transcription factor regulating root and shoot growth via Pin3 1029 1060 IPR013591 -
Pte8g00167 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 382 436 IPR000408 -
Pte8g00167 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 268 329 IPR000408 -
Pte8g00167 1116 SUPERFAMILY RCC1/BLIP-II 267 658 IPR009091 -
Pte8g00167 1116 CDD FYVE_like_SF 666 719 - -
Pte8g00167 1116 MobiDBLite consensus disorder prediction 979 1017 - -
Pte8g00167 1116 SUPERFAMILY PH domain-like 20 128 - -
Pte8g00167 1116 SMART fyve_4 655 724 IPR000306 GO:0046872
Pte8g00167 1116 Pfam Unstructured region between BRX_N and BRX domain 954 1023 - -
Pte8g00167 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 553 604 IPR000408 -
Pte8g00167 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 437 488 IPR000408 -
Pte8g00167 1116 MobiDBLite consensus disorder prediction 830 867 - -
Pte8g00167 1116 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 316 326 IPR000408 -
Pte8g00167 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 501 552 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00167 Pte-Chr8 3177653 3186252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00167 922 1059 Major Intrinsic Protein MIP AT1G31880 30.968 7.47e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00167 - - cave:132163343 1815.82