Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00104 ATGGAAGGAAAACATTTTGATGACAAATTACACTTTATGCACGTCCCTTCTCATGTTCAAGACTCAAATGCTGATTGGAGGTCTAATAAATTGTCTAAGCTGACCATCTTTTATGAAGACAATGTCTATGTCTATCCTGATATTTCTCCCGAAAAGGCTAAAAGCATTATGGCCATGGCTGAAAATGAGTGCTTCAACAATGGCAACACTGAACCAGCCTTGAAGGCAACAGTAGCAGTTAGGGACATGGCGACTAACCCTTACCTGCAAGCGCAGCCTTCTCATGCTACTTGTCCTCCAATGAACCCGTTACCTTCAATCACAGCAGGATTTAAGCAAAATTCAAATTTTAGGGCTTTGGCTCAAGCTCGCAAAGCATCCTTGCAGAGGTTTCTACATAGGAGAAAGCGCAGATTGGAGACTTTGGCATGTTTCCATCTCAGTAAGACAGCTGATCATGAATGGCCCAGCGACCTGTTCTCAGCTCAAGTCATTAGTTTACAGGCTGAGCATAGTCATTAG 522 0.431 MEGKHFDDKLHFMHVPSHVQDSNADWRSNKLSKLTIFYEDNVYVYPDISPEKAKSIMAMAENECFNNGNTEPALKATVAVRDMATNPYLQAQPSHATCPPMNPLPSITAGFKQNSNFRALAQARKASLQRFLHRRKRRLETLACFHLSKTADHEWPSDLFSAQVISLQAEHSH* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00104 173 ProSiteProfiles Tify domain profile. 27 62 IPR010399 -
Pte8g00104 173 Pfam Jas motif 122 140 IPR018467 -
Pte8g00104 173 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 28 141 IPR040390 -
Pte8g00104 173 SMART tify_2 27 62 IPR010399 -
Pte8g00104 173 Pfam tify domain 32 60 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00104 Pte-Chr8 2114476 2116257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00104 32 149 Tify Gene Family AT3G17860 31.875 3.98e-10 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pte8g00104 tify 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00104 K13464 - pvy:116110754 62.3882